Chryseobacterium taihuense: NCTC12078_00012
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Entry
NCTC12078_00012 CDS
T07055
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12078_00012 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctai03019
]
NCTC12078_00012 (rny)
Messenger RNA biogenesis [BR:
ctai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12078_00012 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4407
AAA_15
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
VFB02039
UniProt:
A0A4U8WJ04
LinkDB
All DBs
Position
1:8823..10394
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AA seq
523 aa
AA seq
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MTATAIIIGVICLVIGAAAGMFFSKSSLNTKAKFIIDDAKKNADNLLEKATVQAESIKKE
KHLQAKEKFLELKSQHDADIQAREKKMQEAEKRIKDKENKLNDELSKTGKLEKDLDRQIA
DYAKKNEILDKKQQDLDSATAKKVEMLEKISNYTAEEAKAELVETMRAEAKTRAQAHVQS
IMEEAQLNAKSEARKIVIQTIQRIGTEQAIENSVSVFNIESDEVKGRIIGREGRNIRALE
SVTGVEIIVDDTPEAILLSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVEKTRKQIEE
EIIEVGKRTIIDLGIHGLHPELVKIVGRMKYRSSYGQNLLQHSREVANIAATMAAELGLN
VKLAKRAGLLHDIGKVPEQESELPHALLGMQWAEKFGENAEVVNAIGAHHDEVEMTSLLS
PIIQVADAISGARPGARRQVLESYIQRLKDLESAALSFDGVSSAYAIQAGRELRVMVESG
KVNDEVASQLSYDISEKIQNELTYPGQVKVTVIRETRAVNIAR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccgctattattataggcgttatttgtctggtaataggagctgcagcaggg
atgtttttctctaaaagctcgctcaataccaaggcaaaatttattatagacgatgcaaag
aaaaatgcagataacttattggaaaaagccacagtacaggcagagtccataaagaaagaa
aagcatcttcaggcaaaagagaaatttttggagcttaagtctcagcatgatgcagatatt
caggctagagaaaagaaaatgcaggaggcagaaaaaagaatcaaagacaaggaaaataag
cttaatgatgagctaagcaaaaccggaaaacttgaaaaagatcttgacagacaaattgct
gattatgcaaaaaagaatgagattttagataaaaaacagcaggatcttgactctgcaact
gccaaaaaggttgaaatgctggaaaaaatctccaattataccgcagaggaagctaaagca
gaattggtagaaaccatgagggccgaagcaaaaaccagagctcaggctcatgttcagagc
attatggaggaagctcagcttaatgcaaaaagcgaagcgagaaaaattgtcattcagaca
atccagagaatcggaacagaacaggcaattgaaaattcggtttctgtatttaacatagaa
tctgatgaagtaaaaggacgaatcatcggtagagaaggtagaaacatccgtgctttggaa
tctgtaacaggagttgaaattattgttgatgacacaccggaagccattcttctatcatgt
tttgatcctgtaagaagagaaattgccagactttcccttcacagactggttacagacgga
agaattcacccggcaagaattgaagaagttgtagagaaaaccagaaagcagattgaagag
gaaattattgaggttggtaaaagaacgattattgatttaggaatccacggtttacatcct
gaattagttaaaattgtgggtagaatgaaataccgttcatcatacggacagaatctatta
cagcactcaagagaggtggcaaatattgcggcaacaatggctgccgaattaggtttaaat
gtaaaattagccaaaagagcaggtcttttacacgatataggaaaagttcctgagcaggaa
tctgagcttccgcacgcacttctaggtatgcagtgggctgagaagtttggtgagaatgcg
gaagtcgtaaatgcaataggagctcaccatgatgaggttgaaatgacctctctattgtca
ccaattattcaggttgcggatgctatttcaggagcgagaccgggagcaagacgtcaggtt
ttagaatcttatattcaaagattaaaagatttggaatctgcagcattaagttttgacgga
gtttcttcagcatacgcaattcaggcaggtagagaactgagagtgatggtggaaagcggg
aaagtaaatgatgaggttgcctctcaattgtcttacgatatttcagagaaaattcaaaat
gaactgacgtatccgggacaggtgaaagttaccgttatcagagaaacaagagcagtaaat
atcgcaagataa
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