Chryseobacterium taihuense: NCTC12078_00017
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Entry
NCTC12078_00017 CDS
T07055
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03030
DNA replication
ctai03430
Mismatch repair
ctai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12078_00017 (dnaE)
03430 Mismatch repair
NCTC12078_00017 (dnaE)
03440 Homologous recombination
NCTC12078_00017 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctai03032
]
NCTC12078_00017 (dnaE)
03400 DNA repair and recombination proteins [BR:
ctai03400
]
NCTC12078_00017 (dnaE)
Enzymes [BR:
ctai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12078_00017 (dnaE)
DNA replication proteins [BR:
ctai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12078_00017 (dnaE)
DNA repair and recombination proteins [BR:
ctai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12078_00017 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DUF2857
Motif
Other DBs
NCBI-ProteinID:
VFB02044
UniProt:
A0A4V6ID47
LinkDB
All DBs
Position
1:14583..19250
Genome browser
AA seq
1555 aa
AA seq
DB search
MYLVFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGKLVENQDYIIKPEGYDIPF
NAARIHGITTKIANEEGRDLEEVLNEFAEVLHRVRVVSGHNVEFDYNIVGAEFFRKNIKD
NLQDKPKADTMVLGTEYCQLGGGKGGKYKSPKLEELYEKLYGHKFDEAHNAAADVNATAQ
VFFEMMRIGVIPAEVLKISEDQLSYFKALHPDPVKPFNIVIRRQVADFNNKKKQKDFGSI
DEIDLGKYFNFDNHSVFSTLSATSSINDLIKKAADDQFPAVGMVDLGNMMGAFKFVSAVE
AANGDRAKKHKEYLAKKQEAEENGIEFNEPEPISEPLIPVVGCEFYISDRYEQKQFTKDD
PDRRTQVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRISRELIAEYKEGLIALTSGING
DIPDAILNTGEQKGEELFRWWKDTFGDDFYVQIQNHKLPEEEHLNDVLLHFADKYNVKIL
AQNETFYTNKDDANIQDIVSCIKDGEKLTTPVGKGFGKRRGLATGEYYIKNSDEIKEAFL
AYPDAFDAYEEFTAKFKPYTLKRDVLLPKFDIPQEFIHPEDEIDGGKRGEMAYLTHLTYE
GARKRYVDTGITDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAA
GSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRIIKWVIDKYGQSQ
VAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPPSPGMNIAKALSKYDKLKPEEQ
QLVDEMRLVLDSPHDPRHDVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKD
ADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGIDINPDEIPLDDIKTY
QLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIE
EIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMY
PKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYALIAYQTAYLKANYPAEYMA
SVMSNNINNTDSITMFMEDCKSIGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEG
PSEAITKERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSYHRGQYFDIDMS
GRTNLERLIRYGQSFQESKNEMENSLFADFAEEVQIEQPKLLPCPEWPNMHKLNKEKEII
GFYLSAHPLDEFKFQFLFIQGELSKKAVLEKGDDVKAVIDEVPILEQDTPEDVADLIEIV
SDEILTGEEEIIEEIVKKAEPKGVFGFLNLDEVDAYKEQAFANKQEELFEEKKKDWKTIQ
KERENGGGGKEYTVAGLITEYVVKDGFRSGEKVAFLTLEDYSGSYSFRLGDRDYMKLKEK
LEVQRFVILKIKFAQVKDGRVFVNVVDVIELQEAFERYAKSISLVMDVMDFRPEDLNFFR
RVLEKNQGSQKIKFYIKNIEDDSQIELQSMKQSVNLNGELIKEIQLLNKYEFYLN
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagtttttgataccgaaacaacaggattaccgaagaatttcaacgctccgctt
tcagattcagacaactggcccagaatggttcagattgcatggcagctgcatgatgatgat
ggaaaattagttgaaaatcaggattatatcataaaaccggaagggtatgacattcctttc
aacgcagccagaattcacgggattaccacgaaaattgccaatgaagaaggtcgtgatctt
gaggaagttctgaatgaatttgctgaagttctccatagggtaagggtggtttcaggacac
aatgtggaatttgattataatattgtaggagcagaatttttccgcaagaatataaaagac
aatcttcaggataagccaaaagcagataccatggttttgggaaccgaatattgtcagctt
ggaggaggaaaaggagggaagtataaatctccaaaattggaagaattatacgaaaaatta
tacggtcataaatttgatgaagcccacaacgcggcagccgatgtaaacgccacagcgcag
gtattctttgaaatgatgagaatcggtgtgattcctgctgaagttctgaagatctctgaa
gatcagctttcttattttaaggcacttcatcctgacccggttaagcctttcaatattgtg
atcagaaggcaggttgcggatttcaacaacaagaaaaagcaaaaagatttcggaagtatt
gatgaaattgatctcggcaaatatttcaattttgataatcacagtgtcttttcaacctta
tcagcgacttccagtattaatgatctgatcaaaaaagctgcggatgatcagtttcctgca
gtcggaatggtcgatctgggaaatatgatgggagcttttaagtttgtctcggcagtagaa
gccgccaatggtgacagagcgaaaaagcataaggaatatttagccaaaaagcaggaagca
gaagaaaacggaattgagtttaatgagcctgaacccatttctgaacctttgattccggta
gtaggctgcgagttctatatttcagaccggtatgagcaaaaacagtttacaaaagacgat
cctgaccgtagaacgcaggttgttttgctggcaaaagattttaacggatataaaaatctg
gcaaaactttccagtataggatttttaaaaggtttttactttggcgttcctcgtatcagt
cgcgaattgattgctgaatataaagaaggattaatagctttaacctcaggaattaacgga
gatattcctgatgcgattttaaacaccggtgagcagaaaggtgaagagcttttcagatgg
tggaaagatacttttggtgatgatttttatgttcagatccaaaatcataaattgcctgaa
gaagagcatttgaatgatgttctgctgcattttgcagataaatataatgttaaaatatta
gctcagaacgaaactttttacaccaataaagacgatgccaatattcaggatattgtaagc
tgcattaaagatggtgaaaaactgacaacgcctgttgggaagggttttggaaagagaaga
ggtttggcaacaggagaatattatatcaaaaattcagacgaaataaaagaagcttttctg
gcttatcctgatgcatttgatgcctatgaagagtttacggcgaaatttaaaccttataca
ttaaaaagagacgttcttcttccgaaatttgatattccgcaggagtttattcatccggaa
gatgaaattgacggtggcaaacggggtgaaatggcttacttaacgcatttgacctacgaa
ggagccagaaaaagatatgtagacacaggaattacagacgaaataaaagaacgtctggat
tttgaactggaagttattgccaatacaggctatcctggttatttccttattgttcaggat
ttctgcaacgaggcaagaaagatgggggtttgggtaggtccgggtcgtggttctgcggca
ggttctgcggtagcttactgtatcggaattaccaatgtagacccaattaagtatgacctc
cttttcgagagatttctaaatcctgaaagggtttctatgcccgacattgatattgatttt
gatgacgaaggtagagaccgaatcattaaatgggtgattgataaatatggacaaagccag
gtagcacagattattacatactctgttttaggtgggaaatctgccattaaagatgcagga
agggtattggatgtgccaattcctgatacgaataatattgcaaagctgattcctccaagt
ccgggaatgaatattgccaaagctttatcaaaatatgataaactgaaacctgaagagcag
cagctcgtggatgaaatgagacttgttttagacagtcctcacgatccccgtcacgatgtt
ttggcgagtgcgaaaaaaatggaaggctgtatcaggaataccggaatccatgcatgtgga
gtcatcattacaccggaagatgtgagcaatcttgttcccgtgacaattgctgcaaaagat
gcagatatcctcgtttctcagtttgacaactcagtagcggaaagtgccggtcttctgaaa
atggacttcttagggctgagaactttaacgattataaaagatgcgttaaaacttgtaaaa
gcaagacatggaattgacattaatccggatgagattcctttggacgatatcaaaacctat
cagttatttaaagaaggaagaacagtcggaattttccagtatgaaagtcccggaatgcag
aaatatatgagagagctaaagcctacggtttttgctgatcttattgccatgaacgcatta
tatcgtcccggacctataaagtacattcctaattttattaacagaaaacacggtattgag
gagattgtttatgatttaccggaaactgaagaatatttaaaggaaacttacggaattacc
gtttatcaggagcaggtaatgcttttgtcccaaaaactggcaaatttcaccaaaggtgaa
gccgatacgctgagaaaagcaatgggtaaaaagcagattgatgttctgaataaaatgtat
cctaaatttatagaaggcggaagaaaaaataacctcaacgaagaaagattagaaaaaatc
tggaatgactggaaggcgtttgctgaatacgcctttaataaatctcactctacctgttac
gcattgattgcctatcagacagcatatcttaaagccaattatcctgcggaatatatggca
agtgtgatgagtaacaacatcaacaatacagattctattaccatgtttatggaagattgt
aaaagtattggcgtggatgttctgggaccggatgtgaatgaatcccaatataaattttca
gtaaacgaaaaagggcagattcgttttggtctgggtgcgattaaaggaattggcgagggt
ccgagtgaagctattacgaaagaaagagaaaatggaagatttaaaaatatttatgatttt
tttgaaagaatcctgccgtctcagatgaataaaagagtagctgaaagtttggtgttggcg
ggtgcctttgatgagttggattcttatcaccgaggacagtattttgatattgatatgtcc
ggaagaactaatcttgaaagactcatccgttatgggcaaagtttccaggaaagtaagaat
gaaatggaaaattctctttttgccgattttgctgaagaagttcagattgaacagcctaag
ttgctgccatgccctgaatggccgaacatgcataaattaaataaagaaaaagaaattata
ggattttacctttctgcacatccgctggatgaatttaaatttcagtttctgtttatacag
ggagagctttcgaaaaaagcagtacttgaaaaaggtgatgatgtaaaagctgtcattgat
gaagtgccgattcttgagcaggataccccggaagatgtagctgatctgattgaaatagtt
tcggatgaaatcttaacaggtgaagaagaaattatagaagaaatcgttaaaaaagctgaa
cctaaaggagtatttggttttttgaatcttgacgaagtagatgcatacaaagaacaggct
tttgccaataagcaggaggaactatttgaagaaaagaaaaaagactggaagaccatacaa
aaagagcgagaaaatggtggcggaggaaaagaatatactgtagcgggtttgattacagaa
tacgttgtaaaagacggcttccgaagtggtgaaaaggtagcttttcttacattggaggat
tactctggatcatattctttcaggttgggagaccgggattatatgaaattgaaagaaaaa
ctcgaagtacagcgttttgtgattttaaaaataaaatttgctcaggtaaaagacgggcgg
gtatttgtaaatgtggtggatgtgatagagcttcaggaagcatttgagcgttatgcaaaa
agtatttctttggtaatggatgtaatggatttccgtcctgaagatctcaattttttccga
agagttttagaaaaaaaccagggttcgcaaaaaatcaaattttatattaaaaatatagaa
gatgactcacagattgaattacagtctatgaaacagtcagtaaatcttaatggagagctg
ataaaggaaattcagctgttaaataaatatgagttttatctgaattaa
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integrated database retrieval system
