Chryseobacterium taihuense: NCTC12078_00105
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Entry
NCTC12078_00105 CDS
T07055
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12078_00105 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctai03019
]
NCTC12078_00105 (rhlE_1)
Enzymes [BR:
ctai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12078_00105 (rhlE_1)
Messenger RNA biogenesis [BR:
ctai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12078_00105 (rhlE_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Flavi_DEAD
Cas3-like_C_2
PNT1
DUF5612
Phage_integrase
AAA_22
P-loop_SecA
HEM4
P19Arf_N
Motif
Other DBs
NCBI-ProteinID:
VFB02132
UniProt:
A0A4U8W7R6
LinkDB
All DBs
Position
1:complement(107117..108349)
Genome browser
AA seq
410 aa
AA seq
DB search
MDALQNEGYEKPTPIQEQAIPSILEHRDVLGTAQTGTGKTAAFAIPILQNLTERKAPKNN
HIKALILTPTRELAIQIEESFNAYGRNLPLRKLVIFGGVKQGNQEAALKKGVDILVATPG
RLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQTLFFSATMPGEI
QKLADSILNTPIKVSVTPISSTAETIKQSVYFVEKENKLDLLTHILKNNISDSVLVFSRT
KHGADKIARKLQQSKITAEAIHGNKSQNARQNALNNFKSGKTRILVATDIAARGIDIDEL
KYVVNYELSDVAETYVHRIGRTGRAGAKGSSISFVDGLDLLNLKDTEKLIGMKIPVVKDH
PFHTDDLVVQKRDSNNKPFIPKPKPANPAQQRKDASYKKPKNKSNFSRKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ttggatgcgcttcaaaacgaagggtatgaaaaaccgacacccattcaggaacaggcaata
ccttctatattagaacacagagatgttctgggaacagctcagacaggaacaggaaaaacg
gctgcatttgccattcctatccttcagaatcttaccgaaagaaaagctccgaaaaacaac
cacatcaaagcattgatccttacgccaacaagggaacttgccatacagattgaagaaagc
tttaatgcctacggaagaaatcttcctctcagaaaactggtgattttcggcggcgtaaag
caaggcaatcaggaagccgctttaaagaaaggtgtcgatattctggtggcaacaccggga
aggttactggattttattgcgcagggaattatcagcttaaaaaaccttgaaatttttgtg
ctggatgaagccgacagaatgctggatatgggttttgtgcatgatgtaaaaagaatcatc
aagcttctacctcaaaaaagacagactctttttttctcggcaacaatgcccggagaaatt
cagaaactggcagattctatactcaatacaccgattaaagtatcggtaacaccgatttcc
tccactgctgaaaccattaaacaatcggtctattttgtagagaaagaaaataagctggat
ttgcttacccatattttaaaaaataacatttcggattctgtacttgttttttcaagaaca
aaacacggcgccgacaagattgcacgaaaacttcagcaaagcaaaattaccgcagaagcc
attcatggaaacaaatcccagaatgcacggcaaaatgctttgaacaattttaaatcggga
aaaaccagaattttggttgctactgatattgccgcccgcggaattgatattgatgaattg
aaatatgtggtaaactacgaattatctgatgtcgccgaaacgtacgtccacagaatcgga
agaaccgggagagccggagcaaaaggaagttctatttcttttgtggacggattggatctt
ctgaatctgaaagataccgaaaaactgatcgggatgaaaattcctgtagtaaaagatcat
cctttccatacagatgatctggtagtacagaaaagggattctaacaataaaccttttata
ccaaagccgaaacctgccaatcctgctcagcagagaaaagatgctagttacaaaaaacca
aaaaacaagagtaacttttcccgaaaaaaataa
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