Chryseobacterium taihuense: NCTC12078_01338
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Entry
NCTC12078_01338 CDS
T07055
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12078_01338 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctai03019
]
NCTC12078_01338 (cshA)
03009 Ribosome biogenesis [BR:
ctai03009
]
NCTC12078_01338 (cshA)
Enzymes [BR:
ctai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12078_01338 (cshA)
Messenger RNA biogenesis [BR:
ctai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12078_01338 (cshA)
Ribosome biogenesis [BR:
ctai03009
]
Prokaryotic type
rRNA helicases
NCTC12078_01338 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
VFB03333
UniProt:
A0A4U8WB56
LinkDB
All DBs
Position
1:complement(1429866..1431560)
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AA seq
564 aa
AA seq
DB search
MNLFTETNLSPDLLKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQITKDIKNYSKYMQNIKTTAVYGGSSIMDQIRSLK
EKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETIMRETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVAGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVVHYSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSV
TKIEINEGKIPTGEDIIKAQVGGVFESLFEVHEDFFEFDDSLIPDLSAFSKEELVHKLLQ
FQLKELALYYKDRHDLIEQKLSSRDDDRGGRGDRRDRDRGRDRDRGRDRERGERRGGKPR
HRDENMTRFFFNLGKKDQLKKIDVLEIINKATSSKGNKRAEIGNIEILEKFSFFEVEKSF
KGELLGNISSMKFKGKEMRAEEAN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatttacttaaggcgattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgatttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaagatccaacttttggtgctttgtccgaca
cgggaattatgtcttcagattacgaaagacatcaaaaattattcaaaatacatgcagaac
atcaaaactacagcagtttacggtggcagcagtattatggatcagattcgttctttaaag
gaaaaaccgcagattattgtaggaactccgggaagggtgattgatttgattaacagaaaa
gctttagatttttctgctattcactggctggttttagatgaagcagatgagatgctttca
atgggtttcaaagatgaattggaaacaatcatgagagaaactcctgaaaccaagcagact
ttcttattctctgctacgatgagcaaagaagtagaaagaatttctaaaaactatcttaca
aaacctcacagaatctcagtgggttctattaacgaggttaaaaagaacattaagcatgaa
tattatgttgcaggttaccgtcagaaaaaagaagctctgaagagactcattgacgctaat
cctaaccagtattctattattttctgcagaacaagaatggaaactcaggaagttgcagat
ttcttgatgcagaatggttatgcagcggatgcgcttcatggcgatctttctcaggcacag
agagatacggtgatgaagaaattccgactgaaaaatattgatattctggttgcaaccgat
gttgcagcaagaggtttggatgtaaattctcttacgcacgtggtacattattctttgccg
gatgatccggaagttttcgtacacagaagcggaagaacaggtcgagcaggtaaagatggt
atttcaattgcattgataaagcctgaagaaagcagaaaattgaagcagataaaatctgtt
acaaaaatagaaatcaatgaaggtaaaattcctaccggtgaagatatcataaaagcacag
gttggaggagtttttgaaagtcttttcgaagtacacgaagatttctttgagtttgatgat
tcgctgattcctgatttgtcagctttttcaaaagaagaattggtgcacaaattacttcag
ttccaactaaaagaacttgctttgtactataaggacagacatgatctgatagagcaaaaa
ctgagcagcagagatgatgacagaggcggaagaggagacagaagagatcgtgacagaggc
agagaccgtgacaggggaagggatcgtgagcgtggcgaaagaagaggcggtaagccaaga
catcgcgacgaaaatatgacgaggtttttctttaatcttggtaaaaaagaccagcttaag
aagattgatgtcctcgaaataatcaataaagcgacttcaagcaagggaaataagcgtgct
gaaatcggaaatattgagattcttgaaaaattctcattctttgaagtggagaaatcattt
aaaggagaacttttaggaaatatctcttctatgaagtttaaaggaaaagaaatgagagct
gaagaagctaactaa
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