Chryseobacterium taihuense: NCTC12078_02193
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Entry
NCTC12078_02193 CDS
T07055
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12078_02193 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctai03019
]
NCTC12078_02193 (rnr)
03016 Transfer RNA biogenesis [BR:
ctai03016
]
NCTC12078_02193 (rnr)
Enzymes [BR:
ctai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12078_02193 (rnr)
Messenger RNA biogenesis [BR:
ctai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12078_02193 (rnr)
Transfer RNA biogenesis [BR:
ctai03016
]
Prokaryotic type
tRNA degradation factors
NCTC12078_02193 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
VFB04170
UniProt:
A0A4U8WFL5
LinkDB
All DBs
Position
1:complement(2315171..2317321)
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AA seq
716 aa
AA seq
DB search
MAKKKKYISQKNDHKLMEIGKLIMRFMNQNQTKLYNYKQISDGIDYKNPRQREMVIQALH
KLLANQRIKETEKGKFSINLNIEGTLTGTIDFNQSGNAYVTVENLKDDIFIHSKNVKDAL
QGDTVLIVTYNFKGKKLEGSVLEVLERKRTEFVGTFQLVPHKEFGFVVCDKKTINTDIFI
PKNKINGAENGNKVIVKMTEWKPGDKNPEGEILQVLGNPGEHETEIHSILAEYGLPYNFP
EEVEIDADKIDRRITDEEAAKRWDMRDVLTFTIDPKDAKDFDDALSIRKLENGNWEVGVH
IADVSHYVVPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFE
LNDKAEVKKEWFGRTVIHSDRRFTYEEAQERIETKEGDLQEEINVLDGLAKIMRGERIRN
GAITFDRSEVRFNLDENNQPIGVYFKISKDSNHLIEEFMLLANRKVSEFVSLKKGRPNGN
TFIYRVHDDPDPAKLEALRDFVSTFGYKMDLANTKKVAESLNNLLKDVKGKGEENMIETL
AMRSMSKAIYSTEPIGHYGLGFDYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPDRNELE
EKAKHCSAMERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAEG
LIKLRDLMDDSYTYDKSTHAVYGNRTGNRYQLGDQVKIKVIKANLIAKQLDFKIVE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaaaaaatatataagtcagaaaaatgatcataaactcatggaaatcgga
aagctgattatgagatttatgaatcagaatcaaacaaagctatacaattacaagcaaatc
tcagacgggatagattataaaaatccgagacagcgcgagatggtgattcaggctttgcac
aaattattagcaaatcagagaataaaagaaaccgaaaaaggaaaattcagtattaatctt
aatattgaaggtactctaacaggaaccatagatttcaaccaaagcggaaatgcttatgtt
accgtagaaaatttaaaagatgatattttcattcattcaaagaatgtaaaagatgctttg
cagggtgatacggtactcattgtaacttacaatttcaaaggaaagaagctggaaggttct
gttttggaagttttagaaagaaaaagaacagaatttgtaggtacttttcaattggttccg
cataaagaatttggttttgtggtttgcgataaaaagacgatcaataccgatattttcatt
ccgaaaaataaaattaacggtgctgaaaacggcaataaagtcatcgtaaaaatgaccgaa
tggaaacctggagacaaaaatcccgaaggtgaaattctacaggttcttggaaatcctggg
gaacatgaaacggagatccactctattctcgcagaatatggattaccatacaatttccct
gaagaagtggaaatagatgctgataaaatagaccgcagaattaccgatgaagaggcagca
aaacgctgggatatgcgtgatgtacttacttttacaatagatcctaaagatgcaaaagat
ttcgatgatgcattatcaatcagaaagttagaaaacggaaactgggaagttggagttcat
atagcagacgtttctcattatgtagttccgggaacaattcttgatgatgaagcgtaccaa
agagcaacatctgtttatttggtagaccgtgttgtaccgatgcttcctgaagttttaagc
aatgatgtctgttcgcttcgtccgaatgaggataagtacacattttctgctgtttttgaa
ctgaatgataaagcagaagttaaaaaagagtggttcggaagaaccgtaattcattccgac
agaagatttacgtatgaagaagctcaggaaagaattgaaaccaaagaaggtgatttgcag
gaagaaatcaatgttttggatggtttagctaaaattatgcgcggagaacgtatcagaaat
ggtgcaattactttcgacagaagtgaggttcggtttaatttggatgaaaacaatcagccg
attggtgtttattttaaaatcagtaaagattcaaaccacctgattgaagaatttatgttg
ttggcaaacagaaaagtttcggaatttgtatcgctgaaaaaaggaagaccgaatggaaat
acctttatttacagagttcatgatgatccggatccagcaaagctggaagctttaagagat
tttgtttccactttcggatacaaaatggatttggcaaataccaaaaaagttgctgaatct
ttgaataatttattgaaagatgtaaaaggaaaaggcgaagaaaatatgatcgaaaccctg
gcaatgcgaagcatgagcaaagccatctactctaccgaaccgatcggtcactatggttta
ggattcgattattactcgcatttcacctctcctattcgccgttatccggatttactggcg
cacagattattgcagcattatctggatgggggaaaatctccggacagaaacgaactggaa
gaaaaagcaaaacactgcagtgcaatggagcgtttagcggcagatgcagaaagagattcc
atcaagtttatgcaggtgaaattcatggaaaaacatttaggagaaactttcaccggggtt
atttccggagttgcagaatttggtttctgggttgaaattcctgaaaacggagcggaaggc
ttaataaaactccgtgatttgatggatgattcttacacctacgataaatctacacacgca
gtttacggtaaccgtacaggaaatcgttatcagttgggagatcaggtaaaaattaaagta
ataaaagctaatcttatcgcaaaacagcttgattttaagattgttgaatag
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