Chryseobacterium taihuense: NCTC12078_02564
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Entry
NCTC12078_02564 CDS
T07055
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ctai
Chryseobacterium taihuense
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ctai03016
]
NCTC12078_02564 (rtcB_1)
Enzymes [BR:
ctai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC12078_02564 (rtcB_1)
Transfer RNA biogenesis [BR:
ctai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC12078_02564 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
NCTC12078_02564 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PDDEXK_13
Motif
Other DBs
NCBI-ProteinID:
VFB04533
UniProt:
A0A4U8WE95
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All DBs
Position
1:2707376..2708836
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AA seq
486 aa
AA seq
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MKIFDALMSNILCLISNILLYKTMGNLKLKGKDILKLGYPNNQSVNIALEVMKRNFATKN
IHHVKSILKEILVNPENFEKDLTFGQIAEALLSSKKTEKRMLSTQRAAFNIFGNNISDEA
KNQLFTALKLPIATQGALMPDAHSGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDT
PISYLDGARDKYEKALAEHTKFGMYETHKSHIDHEIFERDTFDLIPILRRLKGKAIKQMG
SSGGGNHFVEFGEVEITEEDEQVGLSKGKYLGILSHSGSRGLGAEIAQYYSRVATEQCPL
PKEAQNFAWLDLNTHLGLEYWTAMNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNF
AWKEIHNGKEVIVHRKGATPANENELGMIPGSMTAKGFIVRGKGNPDSLNSASHGAGRAF
SRSECRSLFTQNDIRKELKLKNVILRGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPR
IVRMDK
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatatttgatgcattaatgtctaacatcttgtgtctaatatctaacatcttatta
tataaaacaatgggaaatttaaaactaaaaggaaaagatatattaaaattaggctatcca
aacaaccaaagtgtaaatattgctttggaagtaatgaaaaggaattttgccaccaaaaac
attcatcacgtcaaatctattttgaaagaaattcttgtaaatccggaaaacttcgagaaa
gatttgaccttcggacagattgcagaagctttgctttcatcaaaaaaaacagaaaagaga
atgctcagtacacaaagagcagcatttaatattttcggaaataatatttccgatgaagca
aaaaaccaattgttcaccgcactgaagctgccgattgcaacacagggtgctttgatgccc
gatgcacatagcggttacggacttcccatcggaggagtcttggctgtggaaaatgcggtg
attccttacggagtcggaatggatatcggttgcagaatgtcccttagtattttggataca
ccaatttcatatctggacggagcaagagacaaatacgaaaaagcgcttgctgagcacacc
aaattcggaatgtatgaaacacacaaatctcacatcgatcacgaaattttcgaaagagac
acatttgatttgattccgattttgagaagattaaaaggaaaagccatcaaacaaatggga
agttccggcggtggaaatcattttgtagaattcggggaagtggaaattacggaagaagat
gagcaggtcggactttcgaaaggaaaatatctggggattctttcacacagcggttcgcgt
ggattaggagctgaaatcgcccagtattattccagagttgcgacagaacaatgtccgctg
ccaaaagaagcgcaaaactttgcctggctggatttgaacacgcatctcggcttggaatac
tggacagcgatgaatctcgcaggagattatgcctcggcttgccacgatgatattcacaga
aggctggtaaaagcagttggcggaagagtaaaagccagaatcgaaaatcatcacaatttt
gcgtggaaagaaatccacaatggaaaagaagtgatcgttcacagaaaaggcgcaactccg
gctaacgaaaatgaattgggaatgattcccggttcgatgacagcgaaaggttttatagtt
cgtggaaaaggaaatccggattcactgaactcggcttctcacggagcaggaagagctttt
tctagaagtgaatgcagaagtttgttcactcaaaatgatatcagaaaagaattgaaatta
aaaaatgtcattttgaggggtggaaatgcagaagaagcaccgatggcgtacaaagacatc
aacgaagtgatgaacgcacaaagtgaactggtcgatattctgggaactttccagcctcga
attgtgaggatggataaataa
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