Chryseobacterium taihuense: NCTC12078_02626
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Entry
NCTC12078_02626 CDS
T07055
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12078_02626 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctai03400
]
NCTC12078_02626 (mfd)
Enzymes [BR:
ctai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12078_02626 (mfd)
DNA repair and recombination proteins [BR:
ctai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12078_02626 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Latarcin
Choline_kin_N
SBP_bac_3
DUF5691
Motif
Other DBs
NCBI-ProteinID:
VFB04595
UniProt:
A0A4U8WHM4
LinkDB
All DBs
Position
1:2769357..2772812
Genome browser
AA seq
1151 aa
AA seq
DB search
MINLKQTLPLYRHLYGFGKLPKSFLSFYRLFMQLKNISENFLPDLLKKEFGKEILQSTDN
HSHLLVKGSAGSSPSVIAAEIFLTTNKTVLFLLDEKEEALYANTEMEDLLGNDDVLYFPA
THLEPYQVEKTQNANLVLRTEVLNKINSDKSPKMIVAFMGALSEKVLKKEDFKAISHHIK
VGDQLDFDFVDELLNHYQFHQTDFVSEPGEFSVRGGIVDVFSYSNEKPYRITFFGNEVEN
IKTFDIETQLSVDKVDDFQLVSNMNFSVSGTKVSLLEILPEDTIIVSKNAVVGLQKIKAF
YEKSLEKYENLNKDIAHRTPQELFISDEEFLFDYKKFKTIDFSSVGIDAVKSTEIKLSQI
TQPSFHKNFEMLIENLFEKQEEGYDLWISFSSEKQKDRLESIFEELGRQVSFKSFKSELH
EGFADQDHKILVYTDHQIFDRYQRYKAKNAFAKSEQLTLKDLMSLKIGDYIAHIDHGIGK
FMGLVKVNNDGKIQECFKLTYKNGDLLYVSIHSLHKISKYNGPDGKEVVLSKLGSPAWKS
LKQKTKAKVKQIAFDLIKLYAERKTAKGFAFSPDSYLQNELEASFVYEDTPDQEKATIDV
KSDMEDDGVMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFKDR
LKDFPVNISYMNRFRTAKQKSETIEGLKNGKIDIVIGTHQLTSEKVKFKDLGLLIIDEEH
KFGVVVKDKLKTLKSNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQIVG
FNEELIRDAVSYELQRDGQVYFINNRVENLKDIAGLIQRLVPDARVITGHGQMDGKQLEQ
NVLDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADLHQMRGRVGRSNRKAFC
YLITPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGF
ETYQKLMQEALEELKDDKDFENLFENEEERQKLFKSVKEVNIDTDLELMLPDSYVSSTEE
RLQLYQKLAEIDNEKDLQKFESELKDRFGELPEEAVNLLKSVSLKWLAADIGFEKIVMKN
GIFLGYFPGNPQDKFYQTDKFRHIISYLTQNPAQAQLKEKVAKEGNQLMMRKDKVKNVDE
VNVLLRSILEQ
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgataaatttaaaacaaaccttacctttgtacagacatttgtacggtttcggaaaactc
ccgaaatcgtttttgtcgttttacagattatttatgcagttaaaaaatatcagcgaaaat
tttttgccggatttattgaaaaaggaatttggaaaagaaattctgcaatctacggacaat
cattcacatcttttggtaaagggaagcgcaggttcttcaccatcggtaatagcagccgaa
attttccttaccacaaacaaaaccgtgctttttcttcttgacgaaaaagaggaagctctc
tatgccaatacagaaatggaggatttgctgggcaatgatgatgtactttattttccagcc
actcatcttgagccttatcaggtagaaaaaacccagaatgctaatctggttcttcgcacc
gaagttctcaataaaatcaattctgataaatcccctaaaatgattgtggcatttatgggc
gctttgtctgaaaaagttcttaaaaaagaagactttaaagccatttcgcatcatataaag
gttggcgatcagcttgattttgattttgtagacgagcttttgaaccattaccagtttcat
cagacagattttgtatctgagcctggagaattttctgtccgcggaggaattgtagatgtt
ttttcttattccaacgaaaagccttacagaatcacttttttcggcaatgaagttgaaaat
attaaaacatttgacatagagactcagctttcggtagataaagtggatgattttcagttg
gtttccaatatgaatttttcagtttcgggaacgaaagtttcgctgcttgaaattcttcca
gaggacacgatcatagtttctaagaatgcagtggtaggtcttcagaaaattaaagcattt
tatgaaaaatcacttgaaaaatatgaaaatctaaacaaagatattgctcacagaacaccg
caggaactttttatttctgatgaagaattcttgtttgattataaaaagttcaaaaccata
gattttagcagtgtcggaattgatgctgtgaaatctacagaaataaaactcagccagatt
acgcagccttctttccacaaaaactttgaaatgcttattgaaaatctttttgaaaagcag
gaagaagggtatgatctgtggatttctttttcatcagaaaagcagaaagacagacttgaa
tctatttttgaagaactggggcgtcaggtttcttttaaaagctttaaatctgagcttcat
gaaggttttgcagatcaggatcataaaattctggtatatacagatcatcagatttttgac
cgctatcaaagatacaaagctaaaaatgcttttgccaaatctgaacagttgacgctgaaa
gatttaatgtctttaaaaataggagactatattgcccatattgaccacggaatcgggaaa
tttatgggattggtgaaggtgaataatgatggaaagattcaggaatgttttaagctgact
tataaaaacggagatttactgtacgtaagcattcattctttgcataaaatttcgaaatat
aatggtccagacggaaaagaagtggtgttgagcaagctgggatctcctgcctggaagtct
ttaaaacagaaaacaaaagctaaagtaaaacagattgcttttgatttgattaaattgtat
gccgaaaggaaaactgcaaaaggttttgcattcagccccgattcctaccttcaaaatgaa
ctggaggcaagttttgtatacgaagacacgcccgatcaggaaaaggcaaccattgatgta
aaaagtgatatggaagatgacggagtgatggatcgtttggtttgtggagatgtaggtttt
gggaaaactgaagtcgcaatccgtgctgcttttaaagcggcaacagacggaaagcaggtt
gcagttctggttccgactaccattcttgcgtttcagcattacagaagtttcaaagatagg
ttaaaagattttccggttaatatatcgtatatgaaccgcttcagaacggcaaaacagaaa
agcgaaacgattgaaggcttaaaaaacggaaaaatagatattgtgatcggaacgcatcaa
ttgacttccgaaaaagtaaaatttaaagatttaggattgctgatcattgatgaggaacat
aaatttggggttgtcgtaaaagataaacttaaaactttgaagagtaatatagataccctt
accttaaccgcaactccgatcccaagaacattgcagttttcgctgatggctgcaagagat
ttatcggtgataaaaactccgccacccaacaggcagcccgtggagacacagattgtcggc
tttaatgaagagctgatccgggatgcggtttcctacgaactacagcgtgacggacaggtt
tattttatcaacaacagggtagaaaacctaaaagatattgcagggcttattcagagatta
gttcctgacgcaagagtaatcaccggtcacggtcagatggacggaaagcagctggaacag
aatgttctggactttatggaaggcaaatatgatgtattggtttctaccaccattgtggaa
agtggagtagacgttccgaatgcaaatactattttcatcaacgatgcgcagcgtttcgga
atggcagatcttcaccagatgagaggaagggtagggcgaagcaacagaaaggctttttgc
tatctcattacaccaccatttgatatgatgacttctgatgcaaggaaaagactggaagcc
attgagcagttttcggatctgggaagcggctttcagattgcgatgaaagatcttgaaatt
cgcggagccggagatttgcttggcggtgaacagagcggatttatcaacgaaatggggttt
gaaacgtatcagaagctgatgcaggaagcgttggaagagcttaaggatgataaagatttt
gaaaatttgtttgaaaatgaagaagaaagacaaaaattattcaaatctgtaaaggaggtg
aatattgatactgatttagagttgatgcttccggactcttatgtgtcaagcaccgaagaa
agattacagctttatcaaaaattggctgaaattgataacgaaaaagatctgcagaagttt
gaatctgaactgaaagaccgctttggagaacttcccgaagaagcagttaatttattgaaa
agtgtttcgctaaaatggcttgctgctgatattggttttgaaaaaattgttatgaaaaac
gggatttttcttggttattttcccggaaatcctcaggataagttttatcagacagataaa
ttccgtcatattatttcgtatctcacccaaaatcctgctcaggctcagctcaaagagaag
gtggcaaaagaaggaaatcaattgatgatgcgaaaagataaagtgaaaaatgtggatgaa
gtaaatgtattgcttcggtctattttggagcagtga
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