Chryseobacterium taihuense: NCTC12078_02848
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Entry
NCTC12078_02848 CDS
T07055
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ctai
Chryseobacterium taihuense
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctai03009
]
NCTC12078_02848 (rlmCD)
Enzymes [BR:
ctai01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC12078_02848 (rlmCD)
Ribosome biogenesis [BR:
ctai03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC12078_02848 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
N6_N4_Mtase
RrnaAD
Methyltransf_4
PCMT
FtsJ
PrmA
UPF0020
2-ph_phosp
NpmA
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
VFB04809
UniProt:
A0A4U8WQL4
LinkDB
All DBs
Position
1:2997585..2999081
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AA seq
498 aa
AA seq
DB search
MSSDKVFFIVLLQSVKNWLLVFKINFLSSMKRNKKNIILENIQLVSAGAKGIAIGRTEEG
KTVMVSGAIPGDVVNVRVKKAKSKYFEGEVLEVIQRSPYRVEPKCIHFGTCGGCKWQNMS
YEKQLDFKQEEVYNNIKRIGGIDNFETLPILGSQEQYFYRNKMEFSFSNSRWLTQYEISS
EENFGNRDALGFHIPGMWSKILDLKECFLQEDPSNAIRLAVKEYAVNEGLDFFDVKNQEG
FLRTLMMRQNSKGEWMILFQLYREEKENREKLFTYLLERFPQIKTLVYAINPKQNDSIYD
LDINIYFGEGFLMEEMDGLKFKIGPKSFFQTNYKQALELYRKTLEFADLKGDEVVYDLYT
GTGTIAQYVARNAKQVIGIESVQEAINAATEHAQLNGLTNTTFYCGDMKDVFTEEFLANH
PKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARDLALMKEQYTLVKILPV
DMFPQTHHVENIALLIKK
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcggataaggttttttttattgtacttttgcagtcagttaaaaactggctgtta
gtttttaaaattaattttttatcatcaatgaaaagaaataaaaagaacattattcttgaa
aatatacaattagtttctgcaggggcaaaaggaattgccatcggaagaacagaagaaggc
aaaacagtaatggtttccggagcaattcccggagatgttgtaaatgtaagagtgaaaaaa
gcaaaatcaaaatattttgaaggagaggttttggaagttattcagcgatctccttacaga
gttgagcccaagtgtattcactttggaacttgcggaggctgcaaatggcagaacatgagc
tacgaaaagcagcttgattttaagcaggaagaagtttacaacaatattaaaagaatcggc
ggaatcgacaactttgagactttaccaattttaggttcacaagagcagtacttctaccgt
aataaaatggagttttcattttctaattcacgctggcttacccagtacgaaatcagctct
gaagaaaatttcggaaaccgtgatgcacttggttttcatatccccggaatgtggagtaaa
attttagatctaaaagaatgttttctacaggaagatccttccaatgccattcgtttagcg
gtaaaagaatatgctgtaaatgaaggactggatttctttgatgtaaaaaaccaggagggt
tttctgagaactttaatgatgaggcaaaattcgaagggagagtggatgattctttttcag
ttgtacagagaggaaaaagaaaacagggaaaagcttttcacttatctgcttgaaagattt
ccacagattaaaacattagtctatgcgatcaatccgaagcagaatgattcaatctatgat
ttagacatcaatatttattttggtgaaggctttttaatggaagaaatggatggtttgaaa
ttcaaaatcggacctaaatctttttttcagaccaattataaacaagctttggaactatac
aggaaaacactggagtttgctgatcttaaaggggatgaagtagtatatgatctgtacaca
ggaaccggtacaattgcacaatatgttgctagaaacgctaaacaggtaatcggcatagaa
tctgtgcaggaagccattaatgcagcaacagaacacgcacagttaaacggactcaccaat
acaacattttattgtggagatatgaaagatgttttcaccgaagagtttttggcaaatcat
cctaaagcagatgtcttgatcacagatccgccgagggacggaatgcatcagaaggtggta
gagcagattttaaagctggctccggaaaaaattgtgtatgtaagttgcaattcagcaact
caggcaagagatttagcactaatgaaagagcagtatacattggttaaaattcttcctgtt
gatatgtttcctcaaacacatcatgtagaaaatattgcgttgctgataaagaaataa
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