Chryseobacterium taihuense: NCTC12078_02904
Help
Entry
NCTC12078_02904 CDS
T07055
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12078_02904 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctai03021
]
NCTC12078_02904 (rpoC)
03400 DNA repair and recombination proteins [BR:
ctai03400
]
NCTC12078_02904 (rpoC)
Enzymes [BR:
ctai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12078_02904 (rpoC)
Transcription machinery [BR:
ctai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12078_02904 (rpoC)
DNA repair and recombination proteins [BR:
ctai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12078_02904 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
VFB04856
UniProt:
A0A1G9SAA6
LinkDB
All DBs
Position
1:3056039..3060304
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPIKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFDHMEFLTEEEYLDIMETLPIENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPIKENGEIVTRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILAETDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIEAVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKVDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEEDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPETDELIANADQVITEELAKKIEEVGLEAVEVRSPLTCETKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNEARTPLMVANIPYGAILAVKP
GDKVSKGDMICRWDPYNAVIIAETAGKVEYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKGYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSVTPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVTEAGDSKVFKPGQMITARELRDE
NSKLKREDQALVEVRDALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDELNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaggactcaagaggggaagttcttaaaccggaaactattaactacaga
acgcacaagcctgaaagagacggcttgttctgtgagaaaatctttggtcctatcaaagat
tacgaatgtgcttgtggtaaatacaagagaattcgttataaagggatcgtttgtgaccgt
tgtggggtagaagttacagagaaaaaagtacgtagagagagaatcggacatatcaatctg
gtagttcctattgctcacatctggtatttccgttcgctgccaaacaaaattggttacctt
ttaggaattccttccaagaaattggatatgatcatttattacgaaagatatgtagtgatt
cagcagggtattgctaaaaaactagacggttcagattttgatcacatggagttccttact
gaggaagaataccttgatattatggaaactcttccgatcgaaaatcaatatcttgatgat
tctgatccgaacaagttcatcgctaaaatgggtgctgaagcggttgaggaattattaaaa
agaattgatcttgatgcattgtctttcgacttaagacacaaagctcacaacgaaggttca
aaacaaagaagaacagaagctctgaaaagattgaacgttgtagaagcattaagaggtgct
aataccagaatgatcaacagaccagagtggatgatcatgcgtgtgcttccggttatccca
ccagaattgagaccattggttcctttggatggaggacgtttcgcaacttccgatctgaat
gacctttacagaagagtgatcatcagaaacaatcgtctgaagagattattggagatcaaa
gctcctgaagtaatcttaagaaatgagaagcgtatgcttcaggaatctgtagattcattg
ttcgataatacaagaaaatcttcagctgtaaaatctgaatcaaacagaccattgaaatcg
ctttcagattcactgaaaggtaagcagggtcgtttccgtcagaacttattaggaaaaagg
gtagattactcagcgcgttcggtaattgttgtaggtccaaacttacagcttcacgagtgc
ggtattcctaaagatatggctgctgaattatacaaaccgttcatcatcagaaaactgatt
gaaagagggattgtaaaaacagtaaaatctgcaaagagaattattgatagaaaagagccg
gtagtatatgatatcctagaaaatgtgatgaaaggtcaccctgttcttctgaacagagca
cctacgcttcacagactgggtattcaggcatttcagcctaaaatgattgaaggtaaggca
attcagttacacccgttggtaacgactgcattcaacgccgatttcgacggtgaccagatg
gcagtacatttaccgttaggtcctgaagcaatccttgaagctcagttattgatgttgggt
tctcaaaacatcctgaaccctgcaaacggttctccaattacagtaccttctcaagacatg
gttcttggtctttattttatgactaaagaattgagctctactgaagatatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaatcgcttatgctgaaggaaga
gtgtctttaaatgctaaagtaagatgtagacttcctatcaaagaaaacggagaaattgtt
acaagattaatcgaaacttctgtaggtagaatcttatttaatcagattgttcccaagcag
gtaggatatattaatgagcttttaactaaaaagtcattaagaaacgttatcggtaaaatt
cttgctgaaacagatttccctacaacagtaaagttcctggatgcaatgaaagacttaggt
tattcaaatgcatttaaaggtggtctttctttctcattaggagacatcgtggttcctgta
gagaaaaagcagatgattgcacagtctattgaagctgttgacgaaattagagccaactat
aacatgggtcttattacggatacagagcgttataaccaggtaatcgacgtttggacaaac
accaatgcaggattaactgaaatgatcatgagcagaatgaaagttgaccaaggtggcttc
aactctgtatacatgatgcttgattccggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcagaaagctggttctaccggtgcggag
atcatcgaaaacccgatccttgcaaactttaaagaaggtctttcaatcttagaatacttt
atctctactcacggtgcccgtaaaggtcttgcggataccgctcttaaaactgccgatgct
ggttacttgacgagaagattggtagacgttgcacaggatgtgatcgttacagaagaagac
tgtggaactttaagaggaaccgaagttactgcattgaagaaaaacgacgaaatcgttgaa
agaatctctgaaagaattttaggtagagtatctcttcataatatttatgatcctgaaact
gacgagctgattgcgaatgctgatcaggtaattactgaggagctggctaagaaaatcgaa
gaagtaggattagaagcagttgaagtacgttcaccgcttacttgtgaaactaaaaaaggt
atctgtgcgaaatgttacggtagaaacttagcaacaggtaagatgattcacatgggtgaa
gcagtaggggtaattgcagcacaatctattggtgaaccgggaactcagcttacgttgaga
acgttccaccaaggaggtactgcaggtaacgtttcagaaaatccttcaattgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaaccattacttctgaagacgaaaacggt
aacaccgctgaagttgtagtttcccgttcaacagaattcagattggttgctgataacgaa
gcaagaactccgttaatggttgccaacatcccttatggtgctatcttggcagttaaacca
ggagataaagtaagcaagggagatatgatctgtagatgggatccgtataatgccgttatt
attgccgaaactgcaggtaaagtagagtatgaagatatcattcagggggtttctttccaa
ttggaaattgacgaacaaaccggttttgaagaaaaagtaatctctgaatccagaaacaag
aaggctgtacctaccctgaaagtagtagactctaaaggagttgagcaaaaaggatacaac
ctaccggtaggagcccacttaatggttaatgatggtgaaaaaattaaggcaggtaaagtc
ttaatcaagataccgagaaaatctgcaaaagcaggggatatcaccggaggtcttcctaga
gttaccgaattattcgaagcgagaaacccttcaaacccagcagttgttacggaaattgac
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaattgatcgttgaggctaag
actggtgagagaaaaatttatttagttaaattatcaaatcagatccttgttcaggaaaat
gactttgtgagagctggttcgccactttctgacggttcggttactccggatgacatcttg
aagatcaaaggtccaactgcagttcaggaatatttagtaaatgaaattcaggaagtttac
cgtttacaaggggtaaaaattgacgacaagcattttgaaattatcgtaagacagatgatg
acgaaagtatctatcgttgatggaggtgatactcagttccttgaaggagctcttgaacat
aaatatgacttcctggaagaaaacaacagagtattcggtcttaaagtagttactgaagca
ggagattctaaagttttcaaaccaggacaaatgattacggcgagagagttgagagatgaa
aattctaaactgaagcgtgaagatcaggctttggttgaagtaagagatgcattgcctgca
accgctacaccagtattgcaggggattacaagagcagctcttcagacaaaatctttcatg
tctgcagcatcattccaggaaacgacaaaagttcttaacgaagcagcagttgctggtaaa
gttgatgaactgaacggtcttaaagagaacgtaattgtaggacacagaattcctgcagga
acgggtcttaaagaatatcagaatgtgattgtaggttctaaaaaagaattcgaagatcta
aactaa
DBGET
integrated database retrieval system
