Chryseobacterium taklimakanense: 4412677_01803
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Entry
4412677_01803 CDS
T05512
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctak
Chryseobacterium taklimakanense
Pathway
ctak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4412677_01803 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctak03400
]
4412677_01803 (mfd)
Enzymes [BR:
ctak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4412677_01803 (mfd)
DNA repair and recombination proteins [BR:
ctak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
4412677_01803 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
FF
Motif
Other DBs
NCBI-ProteinID:
SNV47797
UniProt:
A0A239XM99
LinkDB
All DBs
Position
1:1871505..1874873
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKNISETLLPELLKRNFGYEIFNELENSQSISVKGFAGSAPSVFAAELFLIQKKPVLF
LLNDKEEGLYATSELEELLGKENVLYFPPSHLEPYQIEKVQNANLVLRTEVLNRLNSETQ
PKVIVAPFAALSEKVLKKEDFKAISHHIKVGDTLDFDFVDELLTHYQFHQTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGSEVESIKTFDIETQLSKQKIDEFQLVSNMNFTVSGS
KVPFFDLMNNDSIIVARNAFLGEKKIRDFYEKAEENFLKLSRELKHQTPQELFISEEILH
QNLQKFKFVDFTAQALSGLNLKTVQLSQTAQPSFHKNFELLAEDLNNKKKEGYETWISFS
SEKQKERLESILEEISTETDFRSFKSELHEGFVDAQLKISVYTDHQIFDRYQRFQAKNAF
AKSEQLTLKDLMSLKIGDYITHIDHGIGKFMGLVKVNNDGKVQECFKLVYKNQDLLYVSI
HSLHKISKYNGPEGREIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYSQRKSAKGFAF
TPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEAPTVMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTAKQKSETKEGLKNGI
IDIVIGTHQLVGKDIEFKDLGLLIIDEEHKFGVNVKDKLKTLKNNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTQVIGFNEEIIRDAVAYELHRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITGHGQMEGKQLEQNVLDFMEGKYDVLVSTTIVESGVDVPNANTI
FINDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPYDLMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQNDEEFENLFDNEEERK
KLITTTKDVNIDTDMELMLPDSYVQSTEERLTLYQKLAEIPNENELQRFENQLTDRFGEL
PKEAKNLLKSVELKWLAAEIGFEKIVVKNGIFLGYFPANPQDKFYSGDKFKQIISYLNQN
PTEATLKEKNNQLLMRKEKVQNVDEVNGVLVRILDFERNVSK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaatatcagcgaaacgcttttgcccgaacttttgaaaaggaatttcggc
tacgaaatctttaatgagcttgaaaacagccaaagcatttctgtaaaaggttttgcggga
tcggcgccatcagtttttgcggcggaactatttttaattcagaaaaagccggttctcttt
cttttaaatgataaggaagaagggctgtatgcaacttctgaacttgaggaactcttaggt
aaggaaaatgtgctttactttccgccgtcgcatctggagccttaccagatcgagaaagtg
cagaatgcaaatctggtcttgaggaccgaggttctgaaccgtttaaactctgaaacccaa
cccaaagtgattgtagcgccgtttgcggcactgagcgagaaagttctcaaaaaagaagat
ttcaaagctatttcgcaccatataaaagttggcgatacgctggattttgattttgtggat
gagcttctgacgcactatcagttccaccaaactgattttgtttccgaacccggcgaattt
tctgtgcgtggcgggattgtggacgtattttcttattccaatgaagaaccgtaccgaatt
acattttttggcagcgaggtggaaagcattaaaacttttgatatagaaacccagctttcg
aaacagaaaattgatgaattccagttggtttccaatatgaattttacagtttcaggaagt
aaagttccattttttgacctgatgaataatgacagcatcattgtggcgagaaatgcgttc
cttggtgaaaagaagatccgtgatttttacgaaaaagctgaagaaaactttttaaaatta
agcagagagctcaaacatcagacgccgcaggaactttttatttcggaagaaatattacac
cagaatcttcagaaatttaagtttgttgattttacggcacaggcactttcgggcttaaat
ttgaaaacggttcagctcagccagaccgcacagccaagttttcataaaaattttgagctc
ctcgctgaagatttaaataacaaaaaaaaggaaggctacgaaacatggatttccttttca
tccgaaaagcaaaaggaacggcttgaaagtattctggaagaaatcagtaccgagacagat
ttcaggtccttcaaatcggagcttcatgaaggctttgttgatgctcaactaaaaatatcg
gtttatacagatcatcagatttttgaccgttatcagcgttttcaggcgaagaacgcgttt
gcaaaatcggaacagttgaccctgaaagatctaatgtcgctgaagatcggcgattacatc
acgcatatcgaccacggtatcgggaaatttatgggtttggtaaaagtgaacaacgatgga
aaggtgcaggaatgcttcaaactggtttataaaaatcaggatttgttgtatgtttccatt
cactcgcttcataaaatttcaaaatataacggtccggaaggccgggaaatcgtcttgtcg
aaactcggctcgccagcctggaaatctttaaaacaaaaaactaaggcgaaagtcaagcag
attgctttcgacctcatcaagctttattcccaaagaaaatccgcgaagggatttgccttc
acaccggattcttaccttcaaaacgaactggaagccagcttcatttacgaagatacgcct
gaccaggaaaaggcaacgattgatgttaaaaaagacatggaagcaccaaccgtaatggac
cgtttggtgtgcggtgacgtaggttttggaaagacggaagttgcgattcgtgcagcgttc
aaggcggcaacggacggcaaacaggtggcggttttggtgccgactaccattttggcgttt
cagcattacagaagttttaaagagaggctaaaagatttcccggtgaacatctcttacctc
aaccgtttccgtactgcaaaacagaaatctgaaacgaaggagggactgaaaaacggtata
attgacatcgtcatcggaacacatcagcttgtaggaaaagacattgaatttaaggatctt
gggctattaatcattgatgaagagcacaaatttggcgtaaatgtgaaagacaaactcaag
actctaaaaaataatattgatacgctgacgcttactgcgacgcccattccgaggactttg
cagttttcgctgatggctgcccgggatttatcggtgatcaagacgccgccgccaaaccgg
cagccggtggacacgcaggtgattggttttaatgaagaaatcatccgcgatgctgtggct
tacgaacttcatcgggacgggcaggtttatttcatcaataacagaattgaaaacttaaag
gacattgcagggctgattcagcggttggttcccgatgcacgggtaattaccgggcatgga
caaatggaaggcaagcaactggagcagaatgttctggattttatggaaggaaaatacgat
gtgctggtttccacgacgattgtggaatctggtgttgatgttccgaatgccaatacgatt
ttcatcaatgatgcgcagaaattcgggatggccgatttgcatcaaatgcgcggaagggta
ggtcgcagcaaccggaaagccttctgctatctcattacgccgccttatgatttgatgact
tccgatgcgcggaaacgcctggaggccattgaacagttttctgatctgggaagcggtttc
cagattgcgatgaaagatctggaaatacgcggtgccggcgatctgctgggtgcggaacag
agcggcttcatcaacgaaatgggttttgaaacctatcagaaaattatgcaggaagccctt
gaagagttgcagaatgatgaagaatttgaaaatctttttgataacgaagaggagcgcaaa
aagctcatcaccacgacaaaagacgtaaatatcgacaccgatatggagctgatgctgcct
gactcttatgttcaaagcacagaggaacgcctgacgctttaccaaaagctggcagaaata
cccaacgaaaacgaactgcaaaggtttgaaaatcaactgaccgaccgtttcggagaactc
ccaaaagaagcgaagaatcttctgaagtctgtagagctgaaatggctggctgcagaaatt
ggttttgaaaaaattgttgtgaaaaacggtatatttctgggatatttcccggcaaatccg
caggataaattttattcgggagacaaattcaaacagattatttcatatttaaaccaaaat
ccgacagaagctacactgaaagaaaagaataaccaactgctgatgcgcaaagagaaagtg
caaaatgtggatgaggtaaacggtgtgctggtaaggattctggattttgagagaaatgtc
agcaagtag
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