Chryseobacterium taklimakanense: 4412677_02030
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Entry
4412677_02030 CDS
T05512
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctak
Chryseobacterium taklimakanense
Pathway
ctak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4412677_02030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctak03021
]
4412677_02030 (rpoC)
03400 DNA repair and recombination proteins [BR:
ctak03400
]
4412677_02030 (rpoC)
Enzymes [BR:
ctak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4412677_02030 (rpoC)
Transcription machinery [BR:
ctak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4412677_02030 (rpoC)
DNA repair and recombination proteins [BR:
ctak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4412677_02030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
SNV49017
UniProt:
A0A239XQV8
LinkDB
All DBs
Position
1:2086971..2091236
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFSKITIGLASPESILQESRGEILKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGMAKKADGSDFDEMEFLTEEEYLDVLETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEASSTEDYKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCRLPIKEEGELVTKLIETTVGRILFNQIVPKE
VGFINELLTKKSLRNVIGRILADTNFPTTVKFLDDMKDLGYSNAFKGGLSFSLGDIVIPE
EKKTMIANAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGIEVSALKKNDEIVE
RLSERILGRVSLHDVYHPETDELLVHADEIINEALAKSLETAGIETVEVRSPLTCEAKKG
ICAKCYGRNLATGKPIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTVTSENEFGEKQEVVVSRSTEFRLVADNELRTPLMVANIPYGSALSVKP
GDKVKKGDLIAKWDPYNAVIIAESAGKVKYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLRVVDTKGEELKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSVTPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDAGDTQFLEGALEHKYDFLEENNRIFGMKVVTEAGDSKEFKPGQMITARELRDE
NSKLKREDLQLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDELNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagcagatttagcaaaatcaccatcggtttggcttcaccg
gaatcaatccttcaggaatccagaggagaaattctgaagccggaaaccatcaactacaga
acgcacaagccggaaagagacggtttgttctgcgagaaaatcttcggccctgtgaaggat
tacgaatgtgcctgcggtaaatacaagcgtatccgttataaagggatcgtgtgcgaccgt
tgtggtgtggaagtaaccgagaaaaaagtacgtcgcgagagaattggccacatcaatctg
gtagttcctatcgcgcatatctggtatttccgttcattgccgaacaaaatcggttacctt
ttgggcttgccgtccaaaaaactggatatgattatctattatgaaagatatgtcgtaatt
cagcagggtatggcgaaaaaagccgacggttccgatttcgacgaaatggaattccttaca
gaagaagaatatctggatgttctggaaacacttcctgtggaaaaccagtatcttgacgat
tctgacccgaacaaattcatcgcgaagatgggtgcagaagccgttgaagaattattaaaa
agaatcgaccttgatgccctgtctttcgatttgagacacaaggcacacaacgaaggttct
aaacaaagaagaacagaggcattgaagcgtcttaacgttgtcgaagcacttcgtggggcc
aacacaagaatgatcaaccgtccggaatggatggtgatgagagttcttccggttattccg
ccggaattgagacctcttgttccgttggatgggggtcgttttgcaacttccgatttgaat
gacctttacagaagagtaatcatccgtaacaatcgtttgaagagacttttggaaattaaa
gctccggaagtaatcttaagaaacgagaagcgtatgcttcaggaagcggtagattcactg
ttcgataatacaagaaaatcatcagccgtaaaatctgaatccaacaggcctttgaaatca
ctttctgattcactgaaaggtaaacaaggtcgtttccgtcagaaccttttgggtaaaagg
gttgactactctgcacgttcggtaattgttgtagggccaaaccttcaacttcacgagtgc
ggtatcccgaaagatatggctgcggaattgtacaaaccgttcatcatcagaaaattgatt
gaaagaggaattgtaaaaaccgtaaaatcagcaaaaagaatcatcgacagaaaagagcct
gtggtgtatgatatccttgaaaatgtgatgaaaggccatccggttcttctgaacagggca
cctacgcttcacagattgggtattcaggcattccagccgaaaatgatcgaaggcaaggca
attcagttgcacccgttggtaactacggccttcaacgccgacttcgacggtgaccagatg
gcggttcacttgccgcttggtccggaagcaattctggaagcacaacttttgatgttaggt
tctcaaaatattttgaacccggcaaacggttctccgattactgttccttcacaggacatg
gttcttggtctttatttcatgaccaaagaagcgtcttcaacagaagattacaaagtaaaa
ggtgaaggtttggcattctactctccggaagaagcagaaattgcttacgctgaaggaaaa
gtttctctgaacgctaaagtaagatgccgcttacctataaaagaagaaggagaactggta
accaaactgattgaaactacggttggtagaatcctcttcaaccaaatcgtaccgaaagaa
gttggtttcatcaacgaacttttaactaaaaaatcattgagaaacgttatcggtagaatt
cttgccgatacaaacttcccaactacggtgaagtttcttgatgatatgaaagatttagga
tattctaacgctttcaaaggcggtctttccttctcattgggagatattgtaattccggaa
gagaagaaaacgatgattgccaacgcggtagaaaatgttgacgaaattaaggccaactat
aatatgggtcttatcacagatacagaacgttacaaccaggtaatcgacgtttggacgaat
accaacgccggtcttactgaaatgatcatgagcagaatgaaaaccgaccagggcggattc
aactctgtgtatatgatgctggattccggtgcgaggggttccaaagagcagattcgtcag
ctgtccggtatgcgtggtttgatggcgaagccacagaaagccggctctaccggtgctgaa
attatcgaaaacccgattgtagcaaactttaaagaaggtctttccatccttgagtacttt
atttctactcacggtgcgcgtaaaggtcttgccgataccgctcttaaaactgccgatgcc
ggttatttgaccagaaggcttgtggatgttgcgcaggatgtcatcattacagaagacgac
tgtggaactttgagaggaattgaagtttctgcactgaagaaaaacgacgaaatcgtagaa
aggctttccgaaagaattttgggtagagtttctcttcacgatgtatatcacccggaaacg
gatgaactgttggttcatgcagatgagatcatcaacgaagcactggctaaatctcttgag
actgccggtatcgaaaccgttgaggttcgttcaccattaacctgtgaagctaaaaaaggt
atctgtgcgaaatgttacggtagaaaccttgcaacaggtaaaccaatccatatgggtgaa
gctgtgggtgttattgcagcacagtccatcggtgaacctggtacacagctgacgctgaga
actttccatcagggtggtactgcaggtaacgtttctgaaaatccttccatcgttgctcgt
agagacggtatcgtggaaatggatgaggtaagaactgtaacctcagaaaacgaatttggt
gagaaacaggaagttgtggtttcacgttcgacagaatttcgtttggtggctgataatgag
ttgagaacaccgctgatggtggccaacattccttacggttcagcactttctgtaaaacct
ggtgacaaagtgaaaaaaggcgaccttattgcaaaatgggatccttataacgccgttatc
attgcagaatctgccggtaaagtgaaatatgaagacatcatccagggcgtttcattccag
ttggaaatcgacgagcaaacaggattcgaagagaaagtaatttctgaatctagaaataaa
aaggccgttcctacattaagagtggtagataccaagggtgaagaactgaaagcatacaac
ttgccggtaggtgcgcacttaatggttaatgacggtgagaaaatcaaggctggtaaagtc
ctgattaaaataccaagaaaatctgcaaaagcaggggatatcacaggtggtcttccgaga
gttaccgaattgtttgaggcgagaaacccttcaaaccctgcggtagtaacggaaatcgac
ggtgtagtttcttacggaaaaatcaagagaggtaaccgcgagttaatcgtagaagccaaa
accggagaaagaaagatttatttggtaaaactttcaaaccagattttggtacaggaaaac
gacttcgtaagagcaggttcgccgctttccgacggatccgttactccggatgacatcctt
aagattaaaggcccaactgcagtgcaggaatatttggtgaatgaaattcaggaagtttac
cgtttacagggtgtgaaaatcgatgacaagcacttcgaaatcatcgtaagacagatgatg
accaaagtagaaatcgtggacgccggcgatactcagttccttgaaggtgcccttgaacac
aaatacgatttcctggaagaaaacaacagaatcttcggaatgaaggttgtaaccgaagcc
ggtgattccaaggaattcaagccaggacagatgattacagcacgtgaacttagagacgaa
aactctaaactgaaacgtgaagacctgcaattggtggaggtaagagaagcactccctgct
acagcaacacctgtacttcaggggattacaagagcagctctacaaaccaagtccttcatg
tctgcagcatcgttccaggaaactacaaaagttctgaacgaagccgctgtagccggaaaa
gtagacgaactgaacggtctgaaagaaaacgttattgtaggacacagaattcctgcagga
acgggtcttaaagaataccagaatgtaatcgtaggttctaagaaagaattcgaagacatc
aattaa
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integrated database retrieval system
