Clostridium tetani E88: CTC_00296
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Entry
CTC_00296 CDS
T00112
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ctc
Clostridium tetani E88
Pathway
ctc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTC_00296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctc03021
]
CTC_00296
03019 Messenger RNA biogenesis [BR:
ctc03019
]
CTC_00296
Transcription machinery [BR:
ctc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CTC_00296
Messenger RNA biogenesis [BR:
ctc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CTC_00296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA_25
AAA_22
SAP
AAA
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AAO34939
UniProt:
Q898Z0
LinkDB
All DBs
Position
279777..281276
Genome browser
AA seq
499 aa
AA seq
DB search
MFKFFWRCYFLSSNDLDKLTVNELKEIAKDLEIKGVYKYKKNELIEEIKKVSPMHIEKNG
VVLREKIVPKSGKSKPEGINIEENSNRVESFQGDKIEDRRKEQDNNKQEENKREKLREMI
NESDTAKGVLEIIENNNYGFLRGKNYLTGPDDIYVSPSQIRRFNLQTGDEVEGKVRTPKE
GEKFKALLYVQKVNGENPEKAVRRRPFENLTPIYPQERIKLENSSSDLSSRLMDIISPIG
KGQRGIVVAPPKAGKTTLLKKIAQSISINHPDMKLIVLLIDERPEEVTDMQRSINGEVIY
STFDEEPEHHTKVAYMVLERAKRMVEQGQNVVILLDSLTRLARAYNLTINPTGRTLSGGL
DPGALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLNRKL
QERRIFPAIDIYRSGTRKENLLLSEKEYEASFNIRRLLYDENNTQNVTEQLINMLCKTKN
NDEFVEVISKIDLSKEKNR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaatttttttggaggtgttattttttgtctagtaatgatttagataaattaacg
gtaaatgaacttaaagagatagctaaagacctagaaataaaaggtgtttataagtataaa
aaaaatgagttaatagaggaaatcaaaaaagtttcccctatgcatatagagaaaaatgga
gttgtattaagagagaagatagttccaaagagtgggaagagtaaacctgaaggaattaat
attgaggagaacagtaacagagtggaaagttttcaaggagataaaatagaagatagaaga
aaagaacaggataacaataaacaagaggaaaataagagagaaaaattaagagaaatgata
aatgaatcagataccgcaaaaggtgttcttgaaattattgaaaataataattatggtttt
ttaagaggtaaaaattacttaacaggaccggatgacatatatgtatcaccatctcaaata
agaagatttaatttgcaaacaggagatgaagttgaaggtaaagttagaacaccaaaagaa
ggagaaaaatttaaagcacttctttatgtacaaaaagtaaatggagaaaatccagagaag
gctgttagaagacgtccttttgaaaatcttaccccaatataccctcaagaaagaataaaa
ttagaaaatagttcatctgacctatcttctagactaatggatataatatcccctataggt
aaaggccaaagaggaatagttgttgctcctccaaaggctgggaaaactacacttcttaaa
aagatcgcccaaagtataagtataaatcacccagatatgaagttaatagttttactaata
gatgaaagaccagaagaagttacggatatgcaaagatctataaatggtgaagtgatatat
tcaacttttgacgaagaacctgagcaccatacaaaagtagcatatatggtacttgagaga
gctaaaagaatggtagaacaaggtcaaaatgttgttatactattggatagtttaacaaga
cttgcaagagcatataatcttacaataaatccaacaggaagaactttatcaggaggatta
gatccaggtgctttaataatgcctaaaaaattttttggagcagctagaaatatagaagaa
ggaggtagccttacaatattagctactgccttagttgaaactggaagcagaatggatgat
atgatatttgaagaatttaagggaacgggcaatatggaagttcacttaaatagaaaactg
caagaaagaagaatattcccagctatagatatatacagatcaggaactagaaaagaaaat
ttattattatcagaaaaagaatatgaagcatcatttaatataagaagattactttatgat
gaaaataatactcaaaatgttacagaacaacttataaatatgctttgtaaaactaagaat
aatgatgaatttgtagaagttataagtaaaattgacttaagtaaggaaaaaaatagatag
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