Clostridium tetani E88: CTC_00376
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Entry
CTC_00376 CDS
T00112
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor rpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
ctc
Clostridium tetani E88
Pathway
ctc02020
Two-component system
ctc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CTC_00376 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTC_00376 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctc03021
]
CTC_00376 (rpoN)
Transcription machinery [BR:
ctc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTC_00376 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_12
HTH_17
HTH_23
Sigma70_r4
HTH_11
MarR
HTH_38
HTH_20
Sigma70_r4_2
LacI
HTH_Crp_2
HTH_IclR
HTH_21
HTH_5
HTH_Tnp_ISL3
HTH_36
MarR_2
Fe_dep_repress
HTH_3
HTH_6
HTH_10
HTH_28
KH_BICC1
Motif
Other DBs
NCBI-ProteinID:
AAO35013
UniProt:
Q898R6
LinkDB
All DBs
Position
364944..366329
Genome browser
AA seq
461 aa
AA seq
DB search
MKNVDLGFELSISQEQKLIMTHQMQLSIKILQLSSYELTKLVEKQLQENPLLEINYEEIK
KEESLEENLDEVLKYKNIIKNLQDDNYINNQHSEEEVSPFNFISSKKSLKEYLLEQIMYL
DEKEYIKCICNYIIEGIDERGYLAEDIESISKELKVSINLVIKALNIVQDLEPDGIGARD
LIECLRIQCNKREIKDEKIYNIIDNHLEDIAENKYSNIGKKLDISPKKAQMYGDFIKSLQ
PKPSSGFYTGEEVRYIVPDAYIKKIGREYVILMNESITPKLTINNLYKNIINNNEDEAAV
EYVKEKLNSASYLIKSIEQRKSTIYRVLEKIIEIQREYFDKDKKHLKPMTLKEIAEELKV
HESTVSRAIREKYIHTDKGIIKIRNLFTTAIESKGNEDSLSNIAVKNMIEKFIEEEDKKK
PLSDQNIADRLKKKDVNISRRTVAKYREEMGIKSSMGRKRY
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgtggatttagggtttgagttatctatatctcaagaacaaaaattaataatg
actcatcaaatgcagctatcaataaaaatattgcaactttcttcttatgaacttacaaaa
cttgtggagaaacaattacaagaaaatcctcttttagaaataaattatgaagaaataaaa
aaagaagagagtttggaagagaatttagatgaagtgttaaagtataaaaatattataaaa
aatcttcaagatgataattatataaacaatcaacatagtgaagaagaagtgagtcctttt
aattttatatctagtaaaaaatctttaaaagaatatttattagagcaaataatgtattta
gatgaaaaggaatacattaagtgtatatgtaattacataattgagggtatagatgaaaga
ggatatttggctgaagacatagaatctatttcaaaagaattgaaagtatctattaattta
gtaattaaagcattaaatatagttcaagatttagagccagatggtattggagctagagat
ttaattgaatgtttaaggatacaatgtaataagcgggaaataaaggatgaaaaaatatat
aatataatagataatcatttagaagacattgcagaaaataagtattctaacataggaaag
aaacttgatatatcacctaaaaaagcacagatgtatggagattttataaaatccttacag
cctaagccatctagtggattttatacaggagaagaagtaagatacatagtaccagatgca
tatattaaaaaaataggacgagaatacgttatattaatgaatgaaagtataacacctaaa
cttaccataaacaatttgtacaagaacataataaataataatgaagatgaggccgcagtg
gaatatgtaaaggaaaagttaaatagtgcatcttatctaataaaaagtatagaacaaagg
aaaagtactatatatagggttttagaaaaaataattgaaatacaaagagaatattttgat
aaagataaaaagcacttaaaaccaatgacattaaaagaaatagcagaagaattaaaggtg
catgaatcaacggttagtagagctataagagaaaaatatatacatacagataaaggaatt
ataaaaataagaaatttatttaccacagctattgaaagtaaaggtaacgaggatagctta
tccaatattgcagttaaaaacatgatagaaaagtttatagaagaagaggataagaaaaag
cctctatcagaccaaaatatagcagacagattaaagaaaaaagatgtgaatatttccaga
agaactgtggcaaaatacagagaagaaatgggaataaaatcttctatgggtagaaagaga
tattaa
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