Clostridium tetani E88: CTC_02608
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Entry
CTC_02608 CDS
T00112
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctc
Clostridium tetani E88
Pathway
ctc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTC_02608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctc03021
]
CTC_02608
03400 DNA repair and recombination proteins [BR:
ctc03400
]
CTC_02608
Enzymes [BR:
ctc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTC_02608
Transcription machinery [BR:
ctc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTC_02608
DNA repair and recombination proteins [BR:
ctc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTC_02608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAO37061
UniProt:
Q890N5
LinkDB
All DBs
Position
complement(2753364..2756816)
Genome browser
AA seq
1150 aa
AA seq
DB search
MISTMNINFRREDIPLFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDG
LFCERIFGPTKDWECHCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIW
YFKGIPSRMGLMLDMSPRSLEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAIENYGEE
GFVAGMGAESVQKLLEEIDLNQVSKELKEALKTSTGQKKIRLIRRLEAVESFRKSSNRPD
WMIIDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNE
KRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVI
VVGPELKMYQCGLPKEMALELFKPFVMKKLVQGGLSHNIKSAKRMVERVQSEVWDVLEEV
ISDHPVLLNRAPTLHRLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHLPLSVE
AQAEARFLMLAAHNILKPSDGKPVCVPTQDMVLGSYYLTLDKENAIGEGRIFSSPEEAIM
AYQIGDIDIHAHIKVRISKEVDGEEVCGIIDCTPGKLIFNESIPQDLGFVDRSVPGNEVK
LEVDFLINKSSLGKLINKCYMKHGPTKTSIMLDKIKEKGYHYSTIGAITVSTSDMVVPEA
KKRLLAETDVEVNKIDKMYRRGFISEDERYERVIEKWTKTTDLVADELMKNLDRFNPIFM
MADSGARGSKSQIKQLAGMRGLMANPSGKIIELPIRASFREGLDVSEYFISTHGARKGNA
DTALKTADSGYLTRRLVDVSQDVIVREEDCGSKEGFEISEIREGNEIIEPLSERLTGRYS
AEDIIDPNTGEILVKKEEYIDGEKAEEVEKSGVKKIKIRSVFTCKSKHGVCAKCYGMNMA
TAEKINIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGL
AIVSEINGTIRIDETKKKRTVVVIGETEEISYDIPFGSRLKVSNGDVISAGDEITEGSVN
PHDVLRIKGPNGVKNYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIEESGDTEFLP
GTMVDIFDFQEENAKAEEEGKETAKGRITLLGITKAALATDSFLSSASFQETTRVLTDAA
IKGKVDPLLG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaacgatgaacattaattttcgaagggaggatatacccttgtttgaattaaat
aattttgatgcacttcaaataggattagcttcaccagaaaagatcagagaatggtcaaga
ggtgaagtgaaaaagccagaaactataaattatagaacattaaaaccagaaagagatgga
ttattctgtgagagaatattcggacctacaaaagactgggaatgtcactgcggaaagtat
aagagagtaagatacaaaggtatagtatgtgatagatgtggagtagaggtaacaaagtca
aaggtaagacgtgaaagaatggggcatatagaacttgctgcccctgtatcccatatatgg
tatttcaagggaataccatcacgtatggggcttatgctagatatgtctccaagatcatta
gaaaaagtactttattttgcgtcttatatagtgattgatccaaaagaaacaccgctatta
aagaagcaactattaaacgaaaaagaatatagagaagctattgaaaattatggagaagaa
ggttttgtagctggaatgggagctgaatctgtacaaaagcttttagaagagatagattta
aaccaagtatcaaaagaattaaaagaagctcttaaaacaagcacaggacaaaagaaaata
agactaataagacgattagaggccgtagaatcttttagaaaatctagtaatagaccagat
tggatgattatagatgttattccagttataccaccagatttgagaccaatggttcaattg
gatggaggaagatttgcaacttcagatttgaatgatttatacagaagagtaataaataga
aataatagattgaaaaagctattagatcttggagcaccagatattatagtaagaaacgaa
aaaagaatgctacaagaagcagtagatgctcttatagataacggaagaagaggtagacct
gttacaggaccaggaaatagacctttgaaatcattatctgatatgctaaaaggaaagcaa
ggaagatttagacaaaacctacttggaaaacgtgtagactattctgggcgttcagttata
gttgttgggccagaattgaaaatgtatcaatgtggtcttcctaaagaaatggcattggaa
ctattcaagccttttgttatgaagaaattggttcaaggtggactatcacataatatcaag
agtgcaaagagaatggtagagagagttcagtctgaagtatgggatgttctagaagaagtt
atatcagatcatccagtgttattaaatcgtgctccgactctacatagattaggaatacaa
gcgttccaacctgtgttagtagaaggtagagctataaaattgcatccattagtttgtaca
gcatataatgcagactttgatggagatcaaatggctgtgcatttaccattatctgtagag
gcgcaagcagaagcaagattcttgatgttagctgcacataatatactaaaaccatctgat
ggtaaaccagtttgtgttcctacacaggatatggtattaggatcatactatttaacttta
gataaagagaatgctattggagagggaagaatattttcatcaccagaagaagctattatg
gcatatcaaataggagatattgatattcatgcacacattaaagttagaatatcaaaggaa
gtagatggagaagaggtttgtggaataatagattgtacaccaggaaaactaatattcaac
gaatctatacctcaagacttaggatttgtagatagatccgttccaggaaatgaagttaaa
ttagaagtagactttttaataaataaatcttctttaggaaagttaataaataaatgttat
atgaagcatggtccaactaaaacatctataatgctagataaaataaaggaaaaaggatat
cattactcaactattggtgctattacagtatcaacatcagatatggtagttccagaagct
aaaaaaagacttctagctgaaactgatgtagaagttaataaaatagataagatgtataga
agagggttcatatcagaagatgaaagatatgaaagagtaatagaaaaatggactaagact
acagatttagttgcagatgaattaatgaaaaatctagatagattcaatccaatatttatg
atggcagattcaggagcaagaggatctaagagtcagatcaaacaattagcaggaatgaga
ggtcttatggccaatccttcaggtaagattatagaattgcctataagggcatcatttaga
gaaggattagatgtatcagagtacttcatttcaacccatggagcaagaaaaggaaatgcg
gatactgctcttaaaacagctgactcaggatacttgacaagaagactagtagatgtaagt
caggatgttattgtaagagaagaagactgtggaagcaaagaaggatttgaaatatccgaa
attagagaaggaaatgaaattatagagccattatcagaaagattaactggtagatattca
gcagaagatataattgaccctaatacaggtgagatattagttaagaaagaagaatatata
gatggcgaaaaagctgaggaagttgaaaaaagtggtgtgaaaaaaataaaaatcagatcc
gtatttacatgcaagtcaaaacatggtgtatgtgctaaatgttatggtatgaacatggct
acagcagaaaaaattaacattggtgaatcagtaggtatcatagcagcacaaagtataggg
gagccgggaacacagcttacaatgagaactttccatactggtggagttgctggatcagat
ataacacaaggtcttccaagagtagaagaattatttgaagcaagaaagcctaagggttta
gccatagtttctgaaataaatggaactataagaatagatgaaactaagaaaaagagaaca
gttgtagttattggagaaactgaagaaataagttatgatataccttttggttctagatta
aaagtatcaaatggtgatgttataagtgctggagacgaaataacagagggatctgttaat
cctcatgatgttttaagaataaagggaccaaatggagttaaaaactacttattatcagaa
gttcaaaaagtttatagacttcaaggtgttgatataaatgataaacacttagaggttgta
gttagacaaatgacaagaaagataaaaattgaagaatcaggagatacagaatttttacca
ggaacaatggttgatatattcgatttccaagaagaaaatgctaaggctgaagaggaaggt
aaagaaacagctaagggaagaattacattactaggaataaccaaagcagcattagcgaca
gattcatttttatcatctgcatcattccaagaaactactagagttttaacagatgcagct
ataaaaggtaaagttgatccactattaggataa
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