Chlorobaculum tepidum: CT0156
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Entry
CT0156 CDS
T00088
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CT0156 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cte03021
]
CT0156 (rpoC)
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT0156 (rpoC)
Enzymes [BR:
cte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CT0156 (rpoC)
Transcription machinery [BR:
cte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CT0156 (rpoC)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CT0156 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAM71404
UniProt:
Q8KG14
LinkDB
All DBs
Position
159846..164318
Genome browser
AA seq
1490 aa
AA seq
DB search
MIFSQGSSPLKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKFDRLTEEQYFQIITEYEDNQDLE
DNDPAKFVAKMGGEAIHMLLKGLNLDEIALNLRKVLKESGSEQKRADALKRLKVVEAFRK
SYEPQKRTRKKSTGLFPEEDSPELYIYEGNKPEYMVMEVVPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPVVWDVLEKVIDGHPVLLNRAPTLHRLGIQAFQPTL
IEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSPEAQLEASLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKARFGDVGQGQLFYSMEEVIIAYNEERVGLHAQIFVKYDGKVDQVSD
PVRLVDTLVPEEQAERRAWLKSQIEQKKLLVTTVGRVIFNQHMPEEIGFINKLINKKVAK
ELIAQLSSEVGNVETARFLDNIKEVGFDYAMRGGLSIGLSDAIVPETKVKHIKNAQRDSA
KIIKEYNRGTLTDNERYNQIVDVWQKTSNLVADESYEKLKKDRDGFNPLYMMLDSGARGS
REQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDT
SLKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLHVERNIEEETSGQIKFREKIKGRVAA
RDIVDVINDKVVVKAGEIITDELAAAIQDNIGVEEAEIRSVLTCESKVGICAKCYGTNLS
VHKLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGIAETETKAFYEGQVELEDVK
SVEHSIITEDGIEETRQIVIQKNGKLNIIDPDSGKVLKRYVVPHGAHLNVEHGQMVRKEQ
VLFSSEPNSTQIIAEMPGFAKFIDIEKGVTYKEEVDPQTGFAQHTIINWRSKLRASETRE
PRVAIVSESGEIRKTYPVPIKSNLYVEDGQKIVPGDIIAKVPRNLDRVGGDITAGLPKVT
ELFEARIPTDPAIVSEIDGYVSFGSQRRSSKEIRVKNDFGEEKVYYVQVGKHVLATEGDE
VKAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQ
KVRVEEPGDTDLLPGDLIDRSTFIEANEAVAEKVRVIDRGDAPARIIEGQLYKQRDITKL
NRELRRNGKSLITIEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGK
VDHLVGLKENVIVGKLIPAGTGLRKYRSIRLRDNEAEEAEAVEAASDEEI
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatattttcacagggatcatcaccgctcaagggtgatttttcgaagataaagttcagc
atcgcctctccggagagtattctggcccattcgcgtggcgaggtgctcaagccggaaacc
ataaactaccgtaccttcaagccggaacgtgacggcctgatgtgcgaaaagatattcggt
cctaccaaggactgggaatgctattgcggcaagtacaagagggtgcgctacaagggcatc
atctgcgaccgctgcggcgttgaagtcaccaccaagagcgtgcgccgcgagcgcatgggc
catatctcgctggccgtgccggtggtgcacacctggtttttccgctccgtgccgagcaag
atcggcgcgctgctcgatctctccaccaaggagctggagcgcatcatctactacgaagtg
tacgtggtcatcaaccccggcgagccgggcgagaagcagggcatcaaaaagttcgaccgc
ctgaccgaggagcagtatttccagatcatcaccgagtacgaagacaaccaggacctcgaa
gataacgatccggccaagttcgtcgccaaaatgggtggcgaggcgatccatatgttgctg
aaaggcttgaacctcgacgagatcgcactcaaccttcgcaaggttctcaaggagagcggc
tcggagcagaaacgcgccgatgcgctcaagcgcctcaaggttgtcgaggctttcagaaag
agctacgagccgcagaagcgcacccgcaaaaaatcgaccggtcttttccctgaggaggat
tctccggagctgtacatttacgaaggcaacaagcccgagtacatggtgatggaggtcgtg
ccggtgattccgccggaacttcgtcctctcgtgccgctcgaaggtggccgtttcgccacc
tcagatctgaacgatctgtatcgccgcgtgattatccgcaacaaccgtctgaaaaagctg
atcgacatccgcgctcccgaggtgattttgcgcaacgaaaagcgcatgttgcaggaggcg
gtcgacgccctgttcgacaactcgcgcaaggccaatgcggtgaaaaccggcgagtccaac
cgcccgctcaagtcgctttccgacgctcttaagggcaagcaggggcgttttcgccagaac
ctgctcggcaagcgcgttgactactccggtcgttcggttatcgtggtcggcccggagctg
aaactgcaccagtgcggtctgccgaagagcatggccattgagctgttccagccgttcgtt
atccgccgccttgtcgagcgcggcatcgccaagtcggtcaagtcggccaagaagctcatc
gacaagaaagacccggtagtctgggatgtgcttgaaaaggtgatcgacggccatccggtg
cttctgaaccgtgcgccgaccctgcaccgccttggtatccaggctttccagccgaccctc
atcgagggcaaggcgatccagctccatccgctcgtctgtacggccttcaacgctgacttc
gacggcgaccagatggccgtgcacgtgccgctttcgcctgaagcgcagctcgaagcgtcg
ctcttgatgctctcgtcgcacaacctcattctgccgcagtccggtaagccggttacggtt
ccgtcgcaggacatggtgctcggtatgtactacctgaccaaggcgcgtttcggagatgta
ggccagggacagctcttctactcgatggaagaggtgatcatcgcttacaacgaggagcgt
gtaggtctccatgcccagatttttgttaagtacgacggcaaggtcgaccaggtctccgac
ccggttcgcctggttgatacgcttgtccccgaagaacaggcagaaaggagagcgtggctg
aagagccagattgagcagaagaagctgcttgtcaccacggttggtcgagtgattttcaac
cagcatatgcctgaagagatcggcttcatcaacaagctgatcaacaagaaggtggccaag
gagctgatcgcacagctctccagcgaggtcggtaacgttgagacggcccgcttccttgac
aacatcaaagaggtcggtttcgactacgctatgagaggtggcctgtccatcggcctgtcc
gacgcgatcgtgcctgaaaccaaggtgaagcacatcaagaacgcccagcgtgacagcgcc
aagatcatcaaggagtacaaccgaggcacgctgaccgacaacgaacggtacaaccagatc
gttgatgtctggcagaagacctccaacctcgtggccgacgagtcctacgaaaagctcaag
aaagatcgcgacggcttcaacccgctctatatgatgctcgattcgggtgcccgaggctcc
cgcgagcaggttaggcagttgaccggtatgaggggtctgatcgcccgtccgcagaagtcc
atgtctggccagccgggcgagatcatcgagaacccgattatctcgaacctcaaggagggg
ctgacggtgctcgaatacttcatctcgacgcacggtgcccgtaagggtctgtctgatacc
tcgctcaagacggctgacgccggttacctgaccaggcgtctgcacgacgtggcgcaggat
gtgatcgtcaccattgacgactgcggcaccacgcgcggtctgcacgtcgagcgcaacatc
gaggaggagaccagcggacagatcaagttccgcgaaaagatcaaggggcgcgtggcggcc
cgcgacatcgtcgatgtcatcaacgacaaagttgttgtcaaggccggtgaaattatcacc
gatgagcttgctgccgccattcaggacaacattggtgttgaagaggccgagattcgttcc
gtgctcacctgcgagtcgaaggtcggtatctgtgcgaagtgctacggcaccaacttgtcg
gtgcacaagctcgtcgaaataggtgaggcagtcggcgtgattgcagcacagtccattggt
gagccgggaacgcagctgacgcttcgtaccttccaccagggcggtgcggcgcagggcggt
atcgccgagaccgagaccaaggcgttctatgaaggccaggttgaacttgaagatgtgaag
agtgtcgaacactccatcatcaccgaggacggtatcgaggagacacgccagatcgtcatt
cagaagaacggcaaactcaacatcattgacccagattcgggcaaggttcttaagcgttat
gtggtgccgcatggcgcgcatctcaacgtcgagcacggtcagatggtgcgtaaggagcag
gtgctcttcagcagcgaaccgaacagcacccagattattgccgagatgcccggttttgcg
aaatttatcgacatcgaaaaaggcgtcacctacaaggaggaagttgacccgcagaccggt
ttcgctcagcacaccatcatcaactggcgctccaagctgcgcgcatccgagactcgcgag
ccgcgtgttgccattgtgagcgaatcgggtgaaatcaggaagacctatccggtgccgatc
aagtccaacctctatgtcgaggatggccagaagatcgtgcccggcgatattattgccaag
gtgccgaggaacctcgatcgcgtcggcggcgacattaccgccggtttgccaaaggtgacc
gagctgttcgaagcgcgtattccaaccgatccggctatcgtctctgaaatcgacggttac
gtgagcttcggctcgcagcgccgcagcagcaaggagatcagggtcaagaatgactttggc
gaagagaaggtatactacgtccaggtcggtaagcatgtgcttgccaccgaaggggacgag
gtcaaggcaggtgatccgctgaccgacggcgcggtctcaccgcaggacatcctgcgcatc
cagggccccaacgccgtgcagcagtatctggtcaacgaaattcagaaggtgtatcagatc
aacgccggtgtggagatcaacgacaagcaccttgaggtgatcgtgcgccagatgctgcag
aaggtacgcgttgaagagcctggtgataccgatctgcttccgggcgacctgatcgatcga
agcacctttattgaagccaacgaagccgtggccgaaaaggtcagggtgatcgaccgtggc
gatgctccggcaaggatcatcgagggccagctctacaagcagcgcgacatcaccaagttg
aatcgcgagctacgccgcaacggcaagtcgctcattactatcgagccggcgttgcaggca
acctcgcatccggtgttgctgggtattaccagcgctgccttgcagaccgaaagcgtcatc
tctgcagcctccttccaggagaccaccaaggtgctgaccgatgcagccgtggctggcaag
gttgatcacctcgtcggcctgaaagagaatgtcattgtcggcaagctcattccggccggt
acgggtttgcgcaaataccgctcaatccggcttcgcgacaacgaagctgaagaggctgaa
gctgttgaggcagcatcggacgaggaaatttga
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integrated database retrieval system
