Chlorobaculum tepidum: CT0597
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Entry
CT0597 CDS
T00088
Symbol
deaD-1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT0597 (deaD-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cte03019
]
CT0597 (deaD-1)
03009 Ribosome biogenesis [BR:
cte03009
]
CT0597 (deaD-1)
Enzymes [BR:
cte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CT0597 (deaD-1)
Messenger RNA biogenesis [BR:
cte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CT0597 (deaD-1)
Ribosome biogenesis [BR:
cte03009
]
Prokaryotic type
rRNA helicases
CT0597 (deaD-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAM71839
UniProt:
Q8KET5
LinkDB
All DBs
Position
597656..599629
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AA seq
657 aa
AA seq
DB search
MAATFLSMTRKETMNEPTMSEQQDNSVNFRSLELAEPLLRALEAVGYENPTPIQASTIPL
LLEGRDVLGQAQTGTGKTAAFALPVLSNIDLSATDPQALVLAPTRELAIQVAEAFHTYAE
FMPGFHVLPIYGGQDYGVQIRNLKRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEAD
EMLRMGFIDDVEWILDQTPESRQVALFSATMPQPIVRIARKYLKAPAEITIQTKTTTVET
IRQRYWMVGGHHKLDALTRILEVEPFDGIIIFVRTKTETVALAEKLQARGYAAAALNGDM
VQSARERTIEQLKDGTLNIVIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRA
GRSGEAILFVSPRERGMLFAIERATRKRIELMELPSTEIVNDKRIAKFKQRITDTVGAED
LEFYIGLIGQYCQEHDVSELEAAAALAKLLQGDEPFLLSAKPERERPVRREEREPRYDRE
HGRDSFRDDFRKEREPRRQSKGGLYSDEKRETYRLEVGKVHDVKPGNIAGAIINEIGLDP
EAVGKIVINDQYSTVELPAGMPNDVFQELKKVRVCGRQLRVSKMDEHQGGYGDRHDRGFG
GDRSGNRSFGKDRSGDRGFGGDKKKSFGKPSGGGKRKKDDGAFFTGFTGTKKKRMKD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacttttttatcaatgacccggaaggagacaatgaacgaaccaaccatgagc
gaacagcaagacaattccgtgaatttccgcagccttgaactggctgaacccctgcttcgg
gccctcgaagcggtcggttatgaaaatccaacccccattcaggccagcaccattccgctg
cttcttgaaggtcgtgatgtgctcggtcaggcccagaccggcaccggcaaaacggcggcg
tttgccttgccagtcctctcgaatatcgatctttctgccaccgatccgcaggcgcttgtg
ctcgctccgacccgtgagctggcgatccaggtggccgaggcgtttcacacttacgccgag
ttcatgccgggctttcacgtgctgccgatctatggcggtcaggattacggcgtgcagatc
cgcaacctcaagcgcggcgtgcatgtggtggttggcactccgggccgcgtgatggatcac
atgcgtaagggcacgctgaacctcgacaacctgaagtgcctcgtgcttgacgaggccgac
gagatgctgcgcatgggctttatcgacgatgtcgagtggattctcgaccagacgcctgaa
agccgtcaggtggcgctcttttcggccaccatgcctcagccgattgtacgcatcgcccgc
aagtatctcaaggctccggccgaaatcacgattcagacaaagaccaccacggttgaaacc
atccgccagcgctactggatggtcggcggccaccacaagctcgatgccctgacccgaatc
cttgaagtggagccgtttgacggcatcatcattttcgtacgtaccaaaaccgagaccgtg
gcacttgccgaaaagcttcaggctcgcggttacgccgctgccgcgctgaatggcgacatg
gtgcagtcggcccgcgaacgcaccatcgagcagctcaaggacggcacgctgaacatcgtt
atcgccaccgacgttgccgctcgcggcctcgatgttgagcgtatcagccacgttatcaac
tatgacattccgaccgacaccgagtcttacgtgcaccgcatcggcaggaccggacgcgcc
ggacgcagtggcgaggcgatcctgtttgtctctccgagagagcgcgggatgctcttcgct
atcgagcgagccacgcgcaagcgcatcgagctgatggagctgccctcgaccgagatcgtc
aacgacaagcgcatcgcgaagttcaaacagcgcatcaccgacacagttggagccgaagac
ctcgaattctacatcggcctgatcgggcagtactgccaggagcacgacgtttccgaactc
gaagccgccgctgcgctggccaagctgttgcagggcgacgagccattcctgctttccgcg
aaacctgagcgcgaacgaccggttcgccgcgaagagcgggagccgcgctacgaccgagaa
catggacgcgattcgttccgtgacgattttcgtaaagagcgcgagccgcgcaggcagagc
aagggtggtttgtactcggacgagaagcgggaaacctatcggctcgaggttggtaaagtt
cacgatgtcaaaccgggcaacatcgctggagcgatcatcaacgagatcggtctcgatccc
gaagcggttggcaagatcgtcatcaacgaccagtacagcacggttgaactgcctgccgga
atgccgaacgacgtgttccaggagctgaaaaaggtccgggtgtgcggacgccagctcagg
gtctcgaaaatggatgagcatcagggtggctacggcgaccggcacgaccgtggatttggc
ggtgatcgcagtggcaatcgcagctttggaaaagatcgtagtggtgaccgtggattcggc
ggcgacaagaagaagagcttcggcaagccctcgggcggaggcaagcgcaaaaaagatgat
ggtgcgttcttcaccggttttaccggcaccaaaaagaagcgcatgaaggactga
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