Chlorobaculum tepidum: CT0601
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Entry
CT0601 CDS
T00088
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cte
Chlorobaculum tepidum
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cte03016
]
CT0601
Enzymes [BR:
cte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CT0601
Transfer RNA biogenesis [BR:
cte03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CT0601
Prokaryotic type
tRNA splicing ligases
CT0601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAM71843
UniProt:
Q8KET1
LinkDB
All DBs
Position
602424..603821
Genome browser
AA seq
465 aa
AA seq
DB search
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVG
FALAMPDIHEGYGFPIGGVAAFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPD
LVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEPEDLGHIESGGVIDVA
DPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQL
ITWEIRQAWRAVVGDDPLRVVYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVI
IPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAKHMVQGSQLRQELEAIGVSVQ
AGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtcggcaatcaggcagatttccggttggctttgggagattccgcgttcgtac
cgcagcgacatgcgggtgcccgcgcgtttttacgcatccgaagcgatgctggagcagatt
ctcgccgatcgttcgctggagcagctcgtcaacgtcgccacgctgccgggtattgtcggt
tttgcgctggcgatgcctgacattcacgagggttacggctttccgattggcggcgtggcg
gcgtttgaccccgatgcgggcatcatttcgcccggcggtatcggctacgacatcaactgc
ggcgtgcgtctcttggcaaccagccagcctttcgagagtgttcgcgagaagattcccgat
ctcgtcaaagagatctaccggcaggttccctccggcgtcgggcatggaaaccggatcacc
ttttcatcgaaacagcttgagcagattcttcgtgatggtgcgccccgcatggtggcgttt
ggttacggagaaccggaagaccttggccatatcgagtccggaggcgtgatcgatgtggcc
gatccgtcgaaggtttcacagtacgcgaagcagcggggtggcgatcagctcggcacgctc
ggcacgggcaaccatttcgtggagatcgatcggatcgatgccattttcgatcaggaggcc
gccgtgcgcatgggcttgttcgaggggcagatcgtcattcagctccacaccggttcgcgc
ggtctcggccaccagatcgccaccgattacatccgtgtcatgaaccgcgccatgccgaaa
tacggcatcgaggtgcccgatcgggagcttgcctgtgcgccgttctgctcgccggagggg
caggagtacttcagcgccatgtcggcgggcgcgaacttcgcgtgggcgaaccgccagctc
atcacctgggagattcggcaggcgtggcgcgcggtcgtcggcgacgatccgttgcgcgtg
gtttatgacgtggcgcacaacatcgccaaggtcgagacgcacgaaatcgacggccatcgc
cgccagctcctcgtgcaccgcaagggcgcgacccgcgcgtttgtcggccagccggtgatc
attcccggcagcatgggcacggcctcgttcgtgttggaaggcgggctggcctcgatgcac
gaaagcttcggttcgtcatgccatggtgcaggccgccgcatgtcgcggacgaaagccaag
cacatggtgcagggcagccagctcaggcaggaactcgaagcgatcggcgtctccgtgcag
gccggttcgatgcagggtctcgccgaggaggcttccgccgcctataaggatatcggcgaa
gtggtcagcactgtcgtctcggcaggcatcgcccgaaaagtggtgaggctcgtaccggta
ggggtgatgaaagggtga
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