Chlorobaculum tepidum: CT0653
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Entry
CT0653 CDS
T00088
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CT0653 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT0653 (mfd)
Enzymes [BR:
cte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CT0653 (mfd)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CT0653 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
AAA_19
AAA_22
AAA_16
RecG_dom3_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
AAM71892
UniProt:
Q8KEN4
LinkDB
All DBs
Position
complement(649615..652956)
Genome browser
AA seq
1113 aa
AA seq
DB search
MSAPRNASLEFSSFARNPYRRRFMKFSANPTPQFASIIKRPVDLVLDSLAASAPYRALRE
ALSVATTGEHRAVDICGVRGSLAPFIAAKLFRDFDAPVVLFCNADEQELYDNDLPLLLGG
KPFRNTADELSPALGMLSRRETLVVLAAFEDLSIEVCGTESSNERLFSLAAGSDAGYDAL
MQFLKSNGFEKREFVENEGEFSVRGSIIDVFCYGSREPVRIEFFGDTVSSLRNFDTDSQL
STSAIESVDLFGSFTQESAAESKPAGILDYLPDTAIVIIDDATAMQGSDHRALLEAALPR
FRHVVIQRINKQGIDFNSSEQQRLQGNFRLLAGRLQEEAERGLKPLFACASRREIEELAE
FIADENTSKSPDAIEWIPANLHSGFAFGELNLYTESDIFGKFHTHKAHRKRKVRGISLKE
LQRLKVGDYVVHEDYGIGVFRSLETIQVGDSEQECVLVEYEGGDQLYVNVQNINLLSKYT
ASEGSLPNLSKLGSSKWSAKKERVRKKLRDIAAKLIRVYAKRKMTPGFAFGPDSIFQREF
EASFMFEETPDQLKAIQEVKKDMQSPSPMDRLICGDAGFGKTEIAMRAAFKAVENKKQVA
ILTPTTILTHQHGESFARRFANFPVNIAVLSRFVPRKEQKETIERIASGAMDIVIGTHRL
VSKDVVFKDLGLLVIDEEQHFGVEVKEKLRHQFPGVDTLTMSATPIPRTMQFSMLGARDI
SIVSTPPKNRQPVETIITEFDPETVRAAIKREIQREGQVFFLHNRITSLEETALKLRELV
PYARMATAHGQMPAKELENVMMDFMQQELDVLISTSIIGSGLDISNANTIIINRADMFGL
SDLYQLRGRVGRSERKAYCYLITPPLHTLKREAVQRIAVIETFTELGSGINVALRDLDIR
GAGNLLGAEQSGFIHEIGFDLYQKMIEETVAELKLTEFNHLFSDSEKAALKPQRPCDMIF
FFDALLPDYYITATQERFSCYDRISKAADNTALQNIAKELEDRFGAMPAEVQNLLALARL
KHLGSSLGLEKIDLQQSSATIFLPSDEDKEFYDSAFFQNLIVALQDGSIKEYHPQFKHEK
KMKLVFRHPETADTAPLALIARYEALLKQIAER
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgctccacggaatgcctccctggagttttcctcttttgcccgaaatccgtatcga
cgccgttttatgaaattttccgctaatcccacgccccagttcgccagcatcatcaaaaga
ccggtcgatctcgtgctcgacagccttgccgcgtcggctccgtatcgtgcgctccgcgag
gcgctttcggtagcaacgacaggagagcaccgggctgtggacatctgcggcgttcggggt
tcgctcgcgccgtttatcgccgccaagctgttccgggatttcgacgcaccggtggtgctc
ttttgcaacgccgacgagcaggagctgtacgacaacgacctgccgctcctgcttggcggc
aagcccttccgcaacaccgccgatgagctttctccggcgctcggaatgctctcgcgtcga
gaaacgctcgtcgtgctcgccgcgttcgaagacctcagcatcgaggtatgcggcacggag
tcgtcgaacgaacggctcttttcgctcgccgccggaagcgatgccgggtacgatgcactg
atgcagttccttaaaagcaacggcttcgagaagcgggagttcgtcgagaacgaaggcgag
ttttcggtgcgcggttcgatcatcgatgtcttctgctatggcagccgcgagccggtgcgc
atcgagtttttcggcgacacggtcagctcgctcaggaatttcgacaccgacagccagctc
tcgacctcggccatcgagtcagtcgatctgttcggcagcttcacgcaggagagcgcggcg
gagtcgaaaccggcaggaatcctcgactacctgccagacaccgcgatcgtcatcatcgac
gacgccaccgccatgcaaggctcggatcaccgcgccctgctcgaagcggcgctcccccgc
ttccggcatgtggtcatccagcggataaacaagcagggcatcgacttcaactccagcgag
caacagcggttgcaaggcaattttcgcctgctggccgggcgcttgcaagaggaggctgag
cgcggactgaagccactcttcgcctgcgcgtcacgccgggaaatcgaggagttggcagag
ttcatcgccgatgaaaacaccagtaaatcgccggacgccatcgaatggattccggcgaac
ctgcactccggcttcgccttcggcgagctgaatctctataccgagtcggacattttcggc
aagttccacacccacaaagcgcaccgcaagcgcaaggttcggggcatttcgctcaaggag
cttcagcgcctcaaggtgggcgattacgtcgtgcacgaagattacggcatcggcgtattc
cggtcactcgaaacgatccaggtgggcgattcggagcaggagtgcgtgctggtcgagtac
gaaggcggcgaccagctttacgtcaatgtgcagaacatcaacctcctctcaaagtacacc
gcttcggaaggctcgctgccgaatctctcgaagctcggcagctcgaagtggagcgccaaa
aaggagagagtgcgcaaaaagctgcgcgacatcgccgccaagctgatccgcgtgtacgcg
aagcgcaaaatgacgcccggctttgcgttcgggccggattcgatattccagcgtgagttc
gaggcctccttcatgttcgaggagacccccgaccagctcaaggcgatccaggaggtgaaa
aaggacatgcaatcgccatcgccgatggatcggctcatctgcggcgacgcgggattcggc
aagaccgaaatcgcgatgcgtgcagcattcaaggcggtcgaaaacaaaaagcaggtggcg
atcctgacgccgaccacgattctgacccaccagcatggcgagtcgttcgcgcgtcgattc
gccaacttccctgtgaacatcgccgtcctgagccgcttcgtgccgcgcaaggaacagaaa
gagacgatcgagcgcatcgcgtcgggcgcgatggacatcgttatcggcacgcaccgcctg
gtctcgaaagatgtggtattcaaggacttgggactcctcgtcatcgacgaggagcagcat
ttcggcgtggaggtcaaggagaagctacgccaccagtttcccggcgtcgatacgctcacc
atgtcggccacgccgattccgcgcaccatgcagttctcgatgctcggagcgcgcgacatc
tcaattgtttcgacgccgccgaagaaccgccagccggtcgaaacgatcatcaccgagttc
gatccggaaactgtgcgggcagccatcaagcgcgaaatccagcgcgagggtcaggtcttt
tttcttcacaaccgcatcaccagcctcgaagagaccgcgctgaaactgcgcgagctggtg
ccctacgcccgcatggccacagctcacggccagatgcccgccaaggagctggaaaacgtc
atgatggacttcatgcagcaggagcttgacgtgctgatttcgacctccatcatcggctct
ggcctcgacatctccaacgcaaacacgatcatcatcaaccgcgccgacatgttcggcctg
tcggatctgtaccagctccgagggcgcgtcgggcgaagcgagcgcaaggcgtactgctac
cttatcacgccaccgctgcacacgctcaagcgcgaggcggtgcaacgcattgcggtgatc
gagaccttcaccgaactcggctccggcatcaacgtcgctctccgcgatctcgacatccgc
ggcgcgggcaacctgctcggcgctgagcagtcaggcttcatccacgaaataggcttcgac
ctctaccagaagatgatcgaagagaccgtcgccgagctgaaactcaccgagttcaaccac
ctcttcagcgacagcgaaaaggctgcgctcaaaccgcagaggccgtgcgacatgatcttc
ttcttcgacgcgctccttcccgactactacatcaccgccacgcaggagcgcttctcgtgc
tacgaccgcatctcgaaagctgctgacaacacggcactccaaaacattgccaaagagctg
gaagaccgcttcggcgcaatgcccgccgaggtgcagaacctgctcgcactcgcccgcctg
aagcatctcggctcgtcgctcggcctcgaaaagatcgacctccagcaatcgagcgcaacc
atcttcctaccgtccgacgaggacaaggagttctacgacagtgccttcttccagaacctg
atcgtagcattgcaggacggctccatcaaagagtatcacccgcagttcaagcacgaaaaa
aagatgaagctcgtcttccggcaccctgaaaccgccgacaccgctcccctcgcgctcatc
gcccgctacgaagcgctgctgaaacagatcgcggagagataa
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