Chlorobaculum tepidum: CT1000
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Entry
CT1000 CDS
T00088
Name
(GenBank) ribonuclease II family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cte
Chlorobaculum tepidum
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cte03016
]
CT1000
Enzymes [BR:
cte01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CT1000
Transfer RNA biogenesis [BR:
cte03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CT1000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AAM72235
UniProt:
Q8KDP5
LinkDB
All DBs
Position
948478..949941
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AA seq
487 aa
AA seq
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MSRKKGKADIVKIAVGVMLLNGLEPDFSLEAEHQLESIDGPGKENGSEILDLTSLLWCSI
DNDDSRDLDQLTACEVQEDSSIIIYVAIADVDTLVKKGSPIDKHAWINTTSVYTSAKVFP
MLPLRLSTDLTSLNANENRLAIVTIMKIGADGELITSTVERAWVRNKAKLAYDSVAAWLE
GNGELPPAARAVPGMDQQLRHQDQVAQKLRLRRHAKGSLEFETFQPRAVFEGDRVVDIKE
QEKNRARQLIEEFMISTNTCTANFLAEKGVASIRRVVKSPERWRRIVNVASEYGYALPGA
PDGKALESFLALRFKEDPLRFPDLSLTIIKLMGSGEYVVEFPGQEPIGHFGLAERDYTHS
TAPNRRYPDLITLRMTKAFLTNSPPPYGIDELEYLAVHCTRQEDAARKVERRVRKSEAAL
LMQSMIGHHFDAIVSGHSEKGSWVRIFTPPVEGRLVRNVGKIKVGQKIKVKLVLADVDRG
FIDFERV
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggaaaaaggggaaagccgatatcgttaaaattgcggttggcgtcatgctgctg
aacggtctggagccggatttttcactggaggcggagcatcagctggagtcgattgacggg
ccgggcaaggagaatggctcggaaattctcgatctcacgtcactgctctggtgctcgatc
gataacgacgactcgcgcgatctcgaccagcttaccgcctgtgaagtgcaggaggattcg
tcaatcatcatctacgtggccatcgccgacgtcgataccctggtgaaaaaaggctcgcca
atcgataaacacgcctggataaacaccacctcggtctatacctcggcgaaagtgtttccc
atgctccctctgcgcctctctaccgatctcacctccctcaatgccaacgagaaccggctt
gctatcgtcaccatcatgaagatcggagcggatggcgaactgatcacctccacagtcgag
cgtgcctgggtgcgcaacaaggcgaagctcgcgtacgattccgtcgccgcctggctcgag
ggcaacggcgagctgcctccggcggcccgggcggtgccgggcatggatcagcagttgcgg
catcaggatcaggtagcgcagaagctgcggctacgcaggcacgcaaaaggttcgctggag
ttcgagaccttccagccgcgcgccgttttcgagggagatcgcgtcgttgatatcaaggaa
caggagaagaaccgggcgcggcagctcatcgaggagttcatgatctccaccaacacctgc
accgcaaattttctggcagaaaagggcgtcgcctcgattcgccgcgtcgtcaagtcgcct
gaacggtggcggcgcattgtcaacgtggcgagcgagtacggttacgccttgcccggcgca
cctgacggaaaggcgcttgaaagcttcctcgcattgaggttcaaggaagacccgctccgt
ttccccgatctctccctgaccatcatcaagctcatggggtcgggagagtatgtcgtggag
ttcccggggcaggagccgattggccatttcggccttgccgagcgcgactatacccactcg
acagctccgaacaggcgctatcccgacctgatcaccctgagaatgaccaaggcatttctg
acgaacagtccgccgccctacggcatcgacgagctggagtatctcgcggtacactgcacg
cgccaggaggatgcggcccgcaaggtggagcggcgcgtgcgcaaatccgaagctgcgtta
ctgatgcagagcatgatcggtcaccattttgacgccatcgtctccggccactcggaaaag
ggttcgtgggtgcggatattcacgccgccagtcgaggggcggctggtgaggaacgtcggg
aaaatcaaagtcggccagaaaatcaaggtcaagctcgtgctggcggacgtcgatcgcggc
ttcatcgatttcgaaagggtgtga
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