Chlorobaculum tepidum: CT1070
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Entry
CT1070 CDS
T00088
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CT1070 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT1070 (recD)
Enzymes [BR:
cte01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CT1070 (recD)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CT1070 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
UvrD_C_2
Viral_helicase1
UvrD-helicase
Helicase_RecD
SH3_13
SLFN-g3_helicase
AAA_22
UvrD_C
Mg_chelatase
nSTAND3
DEAD
T2SSE
Herpes_Helicase
AAA_28
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAM72303
UniProt:
Q8KDI0
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All DBs
Position
1009840..1011573
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AA seq
577 aa
AA seq
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MIDFIERPIDWQAAAFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRIPE
REEPLRLLPDVASLIAALRSLPTLGGPGEHCPLILDAAGRLYLYRYFRYETLLAEAIRAR
AASVSLEIDEAALAARLDRYFGVDKSGEDRQRQAALAALRRHFSVISGGPGTGKTTTVVR
ILGLLLEQPGEARMRIAMAAPTGKAAARLASSITSLREALPCADEVKRAIPSQVTTIHRL
LGTIPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLILIGDRDQLAS
VEAGAVLGDICCAAESPVSFIAGCVTVLDRNYRFGDGSGIAALSRAVNAGDHSEALRLFA
DSGSGIALEATPTRETIKKRLVAPVLEGFRPCLEAKTPAEALRLFDRFRILTALREGPWG
ASGINHAAETFLNEAGLIRLDSQFYRGRPVLVTENDYNHKLFNGDTGIMLPDPETGNLRA
FFAAPDGTVRAIPPEFLPKHETAFAMTVHKSQGSEFDRVLMVLPPEDSVLLTRELIYTGI
TRAKQSVTIWSDAAVFSAAVKRRTERRSGLRERLVNS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacttcatagaacggcccatcgactggcaggcagcggcatttctctgccggggt
gtgacggagaacgcggagttgctgcgcacagtggtttcgctgctgagtcaggcggtgggg
caggggcatgtctgcctcgatctggaggaaattgccgaagagctcgtgcgaattcccgaa
cgcgaggagccgctgcgcctcctgcccgacgttgcaagcctcatcgctgcgctgcgctcg
ctgcccacgcttggtgggccaggggagcattgcccgttgattctcgacgccgccggacgg
ctctacctctaccgctatttccgttacgaaacactgcttgccgaagccattcgcgcccgc
gctgcgtcggtgagcctcgaaatcgacgaagccgcgcttgctgcacggctcgaccgctac
ttcggtgtcgataaatccggcgaggatcgccagcggcaggccgcactggcggcgctccgg
cggcacttctcggtcatctccggcggccccggcaccggcaagaccaccaccgtcgtgcgc
atcctcggcctgttgctcgaacagccaggcgaagcacggatgcgtatcgcgatggccgct
cctaccggcaaagccgccgcacggctcgcgtcgtccatcacctcgcttcgggaagcgcta
ccgtgcgcagacgaggtgaaacgcgcgattccaagccaggtcacgacgatccaccgcctg
ctcggcaccattcccggctcgaccggctttcgccacaacgagcgcaacccgctgccttgc
gatgtggtgatcgtcgatgaagcctcgatggtcgatctgccgctcatgaccgcgcttgtc
acggcgctcccgccgcacgcccggctcatcctcattggcgaccgtgaccagctcgcctcg
gtcgaagccggagcggtgctcggcgacatctgctgcgccgccgaatcgcccgtctccttc
atcgccggatgcgtcaccgtgctcgaccgcaactaccgcttcggcgacggctccggcatc
gccgccctcagccgcgccgtcaacgcaggcgaccacagcgaagccttgcgcctcttcgcc
gactccggcagcggcattgctctcgaagccacgccgacgcgcgaaacgatcaaaaagcgc
ctcgtcgccccggtactcgaagggtttcgcccttgcctcgaagccaaaactcccgccgaa
gccctgcgtctcttcgaccgcttccgcatcctcaccgcccttcgcgaaggcccgtgggga
gccagcggcatcaaccacgccgccgaaactttcctgaacgaagccggactcattcgcctc
gatagccagttttaccggggtcgccccgtgctcgtcaccgaaaacgactacaaccacaaa
ctcttcaacggcgacaccggcatcatgctgcccgacccggaaaccggcaacctccgagcc
ttcttcgccgcccccgacggcaccgtccgcgccattccgccagagtttctgcccaagcac
gaaaccgcattcgcgatgaccgtgcacaaaagccagggatcagaattcgacagggttttg
atggttctgcctccggaggattctgttttactgacgagagagttgatttatacggggatc
acgcgggcgaagcagtcggtgacaatctggagcgatgcggctgttttttcagctgcggta
aagcgccggacggagcggaggagcgggttgagggagaggttggtaaacagctaa
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