Chlorobaculum tepidum: CT2162
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Entry
CT2162 CDS
T00088
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CT2162 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cte03021
]
CT2162 (rpoA)
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT2162 (rpoA)
Enzymes [BR:
cte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CT2162 (rpoA)
Transcription machinery [BR:
cte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CT2162 (rpoA)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CT2162 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
AAA_23
CbeA_antitoxin
CxC3
Motif
Other DBs
NCBI-ProteinID:
AAM73378
UniProt:
Q8KAJ8
LinkDB
All DBs
Position
complement(2049746..2050732)
Genome browser
AA seq
328 aa
AA seq
DB search
MIYQMQMPTKIDVDEATHTGSFGRFIAQPLERGYGVTLGNAMRRVLLASLPGTAITGIKI
DGVFHEFSTIDGVREDVPEIVLNLKKVRFKSNCKRSCKTTLTLAGPKDFLAGDIVAQEGE
FEVLNKDLHIATINSEATVTIDIYIGRGRGYVPAEENRSDGMPIGFIAIDSIYTPIKNVK
LTVENTRVGQKTDYEKMILDVETDGSITPDDAISLAGKIINDHITFFANFSPTEEEFSEE
EYKQLDDEFESMRKLLQTKIEDLDLSVRSHNCLRLAEIDSLGDLVSRREEELLNYKNFGK
KSLTELKEQLEKFNLKFGMDITRYQLKG
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgatatatcagatgcagatgcctacaaagatcgatgtggacgaagcgacccacaccggc
agcttcgggcgattcatagcccagccgctggagaggggatacggagttacgctgggcaat
gccatgagaagggttctgcttgcctctcttcctggaacagcaatcaccgggatcaagatc
gatggtgtgtttcacgagttttcaacgattgacggcgttcgcgaggatgtgcccgaaatt
gtactcaatctgaaaaaagtgcgcttcaagtcgaactgcaagcgcagctgcaaaacaacc
ctgacccttgccgggccgaaagatttccttgctggcgacatcgttgcacaggaaggtgaa
ttcgaggtgctcaacaaggatctgcatatcgcgacgatcaactccgaggctaccgtgaca
atcgatatctatatcggccgcgggcgtggttatgtgcccgccgaagagaatcgcagcgac
ggaatgccgattggcttcatcgccatcgactcgatttatacaccgatcaagaacgtcaaa
ctgaccgtcgagaacacccgtgtcggccagaagaccgactacgaaaagatgattctcgat
gtcgaaaccgacggctcgatcactcccgatgacgcgatcagcctcgccggcaagatcatc
aacgatcatatcaccttttttgccaacttctctccgactgaagaggagttctccgaggag
gagtacaaacagctcgacgacgagtttgaaagcatgcgcaagctcctgcagactaaaatc
gaggacctcgatctttcggttcgctcgcacaactgcctgaggctcgccgaaatcgattcg
cttggtgacttggtctccagaagggaagaggagctgctcaactacaaaaattttggcaag
aagtcgctgaccgaactgaaggaacagcttgaaaagtttaacctcaagttcgggatggat
atcacccgttaccagctaaagggttga
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