| Entry |
|
|---|
| Symbol |
rpoC
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
|
|---|
| KO |
|
|---|
| Organism |
cted Corynebacterium testudinoris
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cted00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTEST_01935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cted03021]
CTEST_01935 (rpoC)
03400 DNA repair and recombination proteins [BR:cted03400]
CTEST_01935 (rpoC)
Enzymes [BR:cted01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTEST_01935 (rpoC)
Transcription machinery [BR:cted03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTEST_01935 (rpoC)
DNA repair and recombination proteins [BR:cted03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTEST_01935 (rpoC)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
392349..396359
|
|---|
| AA seq |
1336 aa
MFDVNLFEELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDQSTLEADMLLEKKDVEADAEAEIAERAAKLEED
LAELEAAGAKADARRKVQSAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETV
YEELVDRYEEYFTGGMGAEAIQTLIRNFDLDAEAEILRTIINEGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTMGKSENEIGGQ
GAYKPADENGPEQGVYSSYAEAIMARDLGVLGLQAPIHVRISHLRPPADIEAEQFPDGWE
QGQTWMAETTLGRVMFNELLPWNYPYLEGVMVRKGGGAGNILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTIAMSDVLVLPNKEEILERYEAEARDIEDKYWVKGALRERD
RYDRLVELWQDATNQVGKAVEELYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVPVAIEVKDAEGTVTGFARHPLVETSVSGRVLATEINGADGEQLYAAGDEL
TESRIDELVLNGVTEVKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNASPIAEFDGTVHLEDDGNFYRL
TLTSDDGSEEKVYEKLSKRQGLAQIRVAMENNAGVFIERTLRDGDHLKLGERILRGPADP
HDVLRVLRRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIEAGSTDFLPG
TLVDLSEARRVNAAIRAEGGQPAELRDQIMGITKASLATESWLSAASFQETTRVLTDAAI
NRRSDQLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
AEFTGASVPLDEDFQL |
|---|
| NT seq |
4011 nt +upstreamnt +downstreamnt
gtgttcgacgtaaacctcttcgaagagctccgcatcggcctggccactgccgacgacatt
cgccgttggtccaagggcgaggtcaagaagccggagaccattaactatcgcaccctcaag
ccggagaaggacggcctcttctgcgagcgcatcttcggccctacccgcgactgggagtgt
gcctgcggcaagtacaagcgggtccgttacaagggcatcatctgtgagcgctgtggcgtc
gaggtgaccaagtccaaggtccgccgtgagcgcatgggccacatcgagctggccgcccca
gtcacccacatctggtacttcaagggtgttccgtcgcgtcttggctaccttctggacctg
gctccgaaggacctggagcgaatcatctacttcgctgccaacatcatcacctctgttgat
gaggaagctcgccacaacgatcagtccaccctcgaagcagacatgctgctggagaagaag
gacgtcgaggctgacgccgaggctgagatcgctgagcgcgctgccaagttggaggaggac
ctcgctgagctcgaggctgccggcgctaaggccgacgcccgtcgcaaggtgcagtccgcc
gccgacaaggagatgcagcacatccgcgagcgcgcggagcgcgagatcgaccgcctggag
gagatctggcagaccttcatcaagcttgctcccaagcagatgatcattgatgagaccgtg
tacgaagaactcgtcgaccgctacgaggagtacttcaccggcggcatgggcgctgaagca
attcagacgcttatccgcaacttcgacctcgacgccgaggccgagatcctgcgcaccatc
atcaatgagggcaagggtcagaagaagatgcgcgctctcaagcgcctcaaggtggttgcc
gcgttccagcgttccggcaacgaccccgctggcatggtcctcgactgcgttccggtgatc
ccgccggagctgcgcccgatggtccagcttgatggtggccgcttcgccacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcgcatgatcgatctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaatctgtcgacgct
ctcttcgacaacggtcgtcgcggccgcccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtctgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctgggtaag
cgagtcgactactctggccgttcggtcattatcgtcggcccgcagctcaagctgcacgag
tgtggtctgccgaagctcatggctctcgagctgttcaagccgttcgtgatgaagcgactg
gtggaaaacgagtacgcgcagaacatcaagtccgctaagcgcatggtcgagcgtcagcgt
cccgaggtgtgggacgtgctcgaggaggctatctccgagcacccggtcatgctcaaccgt
gcacctaccctgcaccgcctgggtatccaggccttcgagccgaagctcgtcgagggtaag
gccattcagctgcacccgctcgcgtgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggctcaggccgaagctcgcgtgctcatgctc
gcctcgaacaacatcctgtccccggcctccggcaagccgttggctatgccgcgcctggac
atggtcacgggtctgtacttcctgactatgggtaagtccgagaacgagattggtggccag
ggcgcctacaagccggccgatgagaacggtccggagcagggcgtctactcgtcctacgcc
gaggccatcatggctcgcgatctgggtgttctgggtctgcaggccccgatccacgtccgg
atttcgcacctgcgtcccccggctgacatcgaggctgagcagttccccgacggttgggag
cagggtcagacctggatggcggagaccacccttggtcgcgtcatgttcaacgagctgctg
ccgtggaactacccgtacctggagggcgtcatggtccgtaagggtggcggcgctggcaac
attctgctcggcgacgtcatcaacgacctcgcagccacctacccgatgatcaccgtcgct
cagacgatggacaagatgaaggacgctggcttctactgggccacccgttccggcgtcacc
atcgccatgtccgacgttttggtcctccccaacaaggaggagatcctcgagcgttacgag
gccgaggcccgtgacatcgaagacaagtactgggtcaagggtgcgctgcgtgagcgcgac
cgctacgaccgtctggtcgagctgtggcaggacgctaccaaccaggtgggtaaggccgtc
gaggagctctaccccgacgacaacccgatcccgatgatcgtgaagtccggcgctgccggc
aacatgcgtcagatctggaccctggctggtatgaagggcatggtcgtgaactccaagggt
gactacatcacccgaccgatcaagacctccttccgcgaaggcctctccgttctcgagtac
ttcaacaactcgcacggttcccgtaagggcctggccgataccgcgctgcgtaccgctgac
tccggctacctgacccgtcgtctcgtcgacgtggcccaggacgtcatcgtccgcgaggac
gactgtggcacccgtcagggcgttcgcgtccccgtcgccatcgaggtcaaggacgccgaa
ggcaccgtcaccggcttcgcccgccaccccttggtcgagacgtctgtctccggccgagtc
ttggctaccgagatcaatggtgccgacggtgagcagctctacgccgctggcgacgagctc
actgaatcgcgtatcgacgagctcgtgctcaacggtgtcaccgaagtcaaggtccgctcc
gtcctcacttgccagacgcccaccggcgtctgcgccaagtgctacggcaagtccatggca
tcgggccagctcgttgacatcggcgaggcagtcggcattgtcgctgctcagtcgatcggt
gagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcggtggcgacatc
accggcggcctcccgcgtgtccaggagctgttcgaggcccgcgtgcccaagaacgcctcc
ccgatcgcggagttcgacggcaccgttcacctcgaggacgacggcaacttctaccggttg
acgctgacctccgacgatggctccgaggagaaggtctacgagaagctgtccaagcgacag
ggcctcgcccagatccgcgtcgccatggagaacaacgctggcgtgttcatcgagcgcacc
ctgcgcgacggtgaccacctcaagctgggcgagcgcatcctgcgcggacccgccgacccg
cacgatgtgctgcgggtgctgcgtcgtcgcggcgtcgaaaagcaccttatcgacgaagtg
caagccgtctaccgcacccagggtgtggccatccacgacaagcacatcgagatcatcatc
cgccagatgctgcgccgcggtaccgtcatcgaagccggctccaccgacttcctgccgggc
accctggttgacctgtccgaggcacgtcgcgtcaacgccgcgatccgcgccgaaggcggc
cagcccgccgagctgcgcgaccagatcatgggcatcaccaaggcctcgctggctaccgag
tcctggctgtccgccgcatcgttccaggagaccactcgtgtcctgaccgatgctgcgatc
aaccgtcgctctgaccagctcatcggcctgaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggcatctcccgctaccgcaacatctccgtcaagccgaccgaggccgcc
cgcaacgccgcctactcgatccccacctacggggactcgatctacggcgacgacggctac
gccgagttcaccggcgcatccgtgccgctggacgaggacttccagctctag |
|---|
