Corynebacterium testudinoris: CTEST_01935
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Entry
CTEST_01935 CDS
T03956
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cted
Corynebacterium testudinoris
Pathway
cted03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cted00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTEST_01935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cted03021
]
CTEST_01935 (rpoC)
03400 DNA repair and recombination proteins [BR:
cted03400
]
CTEST_01935 (rpoC)
Enzymes [BR:
cted01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTEST_01935 (rpoC)
Transcription machinery [BR:
cted03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTEST_01935 (rpoC)
DNA repair and recombination proteins [BR:
cted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTEST_01935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
AKK07842
UniProt:
A0A0G3H9N8
LinkDB
All DBs
Position
392349..396359
Genome browser
AA seq
1336 aa
AA seq
DB search
MFDVNLFEELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDQSTLEADMLLEKKDVEADAEAEIAERAAKLEED
LAELEAAGAKADARRKVQSAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETV
YEELVDRYEEYFTGGMGAEAIQTLIRNFDLDAEAEILRTIINEGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTMGKSENEIGGQ
GAYKPADENGPEQGVYSSYAEAIMARDLGVLGLQAPIHVRISHLRPPADIEAEQFPDGWE
QGQTWMAETTLGRVMFNELLPWNYPYLEGVMVRKGGGAGNILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTIAMSDVLVLPNKEEILERYEAEARDIEDKYWVKGALRERD
RYDRLVELWQDATNQVGKAVEELYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVPVAIEVKDAEGTVTGFARHPLVETSVSGRVLATEINGADGEQLYAAGDEL
TESRIDELVLNGVTEVKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNASPIAEFDGTVHLEDDGNFYRL
TLTSDDGSEEKVYEKLSKRQGLAQIRVAMENNAGVFIERTLRDGDHLKLGERILRGPADP
HDVLRVLRRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIEAGSTDFLPG
TLVDLSEARRVNAAIRAEGGQPAELRDQIMGITKASLATESWLSAASFQETTRVLTDAAI
NRRSDQLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
AEFTGASVPLDEDFQL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtaaacctcttcgaagagctccgcatcggcctggccactgccgacgacatt
cgccgttggtccaagggcgaggtcaagaagccggagaccattaactatcgcaccctcaag
ccggagaaggacggcctcttctgcgagcgcatcttcggccctacccgcgactgggagtgt
gcctgcggcaagtacaagcgggtccgttacaagggcatcatctgtgagcgctgtggcgtc
gaggtgaccaagtccaaggtccgccgtgagcgcatgggccacatcgagctggccgcccca
gtcacccacatctggtacttcaagggtgttccgtcgcgtcttggctaccttctggacctg
gctccgaaggacctggagcgaatcatctacttcgctgccaacatcatcacctctgttgat
gaggaagctcgccacaacgatcagtccaccctcgaagcagacatgctgctggagaagaag
gacgtcgaggctgacgccgaggctgagatcgctgagcgcgctgccaagttggaggaggac
ctcgctgagctcgaggctgccggcgctaaggccgacgcccgtcgcaaggtgcagtccgcc
gccgacaaggagatgcagcacatccgcgagcgcgcggagcgcgagatcgaccgcctggag
gagatctggcagaccttcatcaagcttgctcccaagcagatgatcattgatgagaccgtg
tacgaagaactcgtcgaccgctacgaggagtacttcaccggcggcatgggcgctgaagca
attcagacgcttatccgcaacttcgacctcgacgccgaggccgagatcctgcgcaccatc
atcaatgagggcaagggtcagaagaagatgcgcgctctcaagcgcctcaaggtggttgcc
gcgttccagcgttccggcaacgaccccgctggcatggtcctcgactgcgttccggtgatc
ccgccggagctgcgcccgatggtccagcttgatggtggccgcttcgccacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcgcatgatcgatctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaatctgtcgacgct
ctcttcgacaacggtcgtcgcggccgcccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtctgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctgggtaag
cgagtcgactactctggccgttcggtcattatcgtcggcccgcagctcaagctgcacgag
tgtggtctgccgaagctcatggctctcgagctgttcaagccgttcgtgatgaagcgactg
gtggaaaacgagtacgcgcagaacatcaagtccgctaagcgcatggtcgagcgtcagcgt
cccgaggtgtgggacgtgctcgaggaggctatctccgagcacccggtcatgctcaaccgt
gcacctaccctgcaccgcctgggtatccaggccttcgagccgaagctcgtcgagggtaag
gccattcagctgcacccgctcgcgtgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggctcaggccgaagctcgcgtgctcatgctc
gcctcgaacaacatcctgtccccggcctccggcaagccgttggctatgccgcgcctggac
atggtcacgggtctgtacttcctgactatgggtaagtccgagaacgagattggtggccag
ggcgcctacaagccggccgatgagaacggtccggagcagggcgtctactcgtcctacgcc
gaggccatcatggctcgcgatctgggtgttctgggtctgcaggccccgatccacgtccgg
atttcgcacctgcgtcccccggctgacatcgaggctgagcagttccccgacggttgggag
cagggtcagacctggatggcggagaccacccttggtcgcgtcatgttcaacgagctgctg
ccgtggaactacccgtacctggagggcgtcatggtccgtaagggtggcggcgctggcaac
attctgctcggcgacgtcatcaacgacctcgcagccacctacccgatgatcaccgtcgct
cagacgatggacaagatgaaggacgctggcttctactgggccacccgttccggcgtcacc
atcgccatgtccgacgttttggtcctccccaacaaggaggagatcctcgagcgttacgag
gccgaggcccgtgacatcgaagacaagtactgggtcaagggtgcgctgcgtgagcgcgac
cgctacgaccgtctggtcgagctgtggcaggacgctaccaaccaggtgggtaaggccgtc
gaggagctctaccccgacgacaacccgatcccgatgatcgtgaagtccggcgctgccggc
aacatgcgtcagatctggaccctggctggtatgaagggcatggtcgtgaactccaagggt
gactacatcacccgaccgatcaagacctccttccgcgaaggcctctccgttctcgagtac
ttcaacaactcgcacggttcccgtaagggcctggccgataccgcgctgcgtaccgctgac
tccggctacctgacccgtcgtctcgtcgacgtggcccaggacgtcatcgtccgcgaggac
gactgtggcacccgtcagggcgttcgcgtccccgtcgccatcgaggtcaaggacgccgaa
ggcaccgtcaccggcttcgcccgccaccccttggtcgagacgtctgtctccggccgagtc
ttggctaccgagatcaatggtgccgacggtgagcagctctacgccgctggcgacgagctc
actgaatcgcgtatcgacgagctcgtgctcaacggtgtcaccgaagtcaaggtccgctcc
gtcctcacttgccagacgcccaccggcgtctgcgccaagtgctacggcaagtccatggca
tcgggccagctcgttgacatcggcgaggcagtcggcattgtcgctgctcagtcgatcggt
gagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcggtggcgacatc
accggcggcctcccgcgtgtccaggagctgttcgaggcccgcgtgcccaagaacgcctcc
ccgatcgcggagttcgacggcaccgttcacctcgaggacgacggcaacttctaccggttg
acgctgacctccgacgatggctccgaggagaaggtctacgagaagctgtccaagcgacag
ggcctcgcccagatccgcgtcgccatggagaacaacgctggcgtgttcatcgagcgcacc
ctgcgcgacggtgaccacctcaagctgggcgagcgcatcctgcgcggacccgccgacccg
cacgatgtgctgcgggtgctgcgtcgtcgcggcgtcgaaaagcaccttatcgacgaagtg
caagccgtctaccgcacccagggtgtggccatccacgacaagcacatcgagatcatcatc
cgccagatgctgcgccgcggtaccgtcatcgaagccggctccaccgacttcctgccgggc
accctggttgacctgtccgaggcacgtcgcgtcaacgccgcgatccgcgccgaaggcggc
cagcccgccgagctgcgcgaccagatcatgggcatcaccaaggcctcgctggctaccgag
tcctggctgtccgccgcatcgttccaggagaccactcgtgtcctgaccgatgctgcgatc
aaccgtcgctctgaccagctcatcggcctgaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggcatctcccgctaccgcaacatctccgtcaagccgaccgaggccgcc
cgcaacgccgcctactcgatccccacctacggggactcgatctacggcgacgacggctac
gccgagttcaccggcgcatccgtgccgctggacgaggacttccagctctag
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