Corynebacterium testudinoris: CTEST_04200
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Entry
CTEST_04200 CDS
T03956
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cted
Corynebacterium testudinoris
Pathway
cted03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTEST_04200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cted03400
]
CTEST_04200 (mfd)
Enzymes [BR:
cted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTEST_04200 (mfd)
DNA repair and recombination proteins [BR:
cted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTEST_04200 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AKK08288
UniProt:
A0A0G3H8V5
LinkDB
All DBs
Position
846417..850049
Genome browser
AA seq
1210 aa
AA seq
DB search
MLAGLLKVAATDPKLKGMLAHRGEPQLHLQGIDQARPWAVGALAQQSPVLVVTATGREAE
DLTAELRALLGDKVAWFPSWETLPHERLSPGADTIGRRAQVLDQLIDARVSVVVTAARGF
CQPLLESAEGREPIRLVQGQEYDFSALTEELVFRAYHHVDMVARRGEFATRGGILDIFPT
TADHPVRVEFWGDEVSDIRLFAVADQRTIPDAEVSQVEIYPARELPITEAIAKRAGELAL
EHPGNATLVELLTKLSDRIPADGMEALIPALVDKQMRTLPELMPAGTHVVLVAPEKIRRR
IADLEATDAEFLAAGWEAAAMGATGPIAAEGLDLSASSYRSFESLEVSVRQAGLSWWTFS
PPGMFEGAEGDTLPLDFEPGPTPRGDADGIAAMMSLLLAHTSSGGRAAFIAPAQGAIKRM
VDRFAEQGIPARVATPGWEPSPGEVTLYQAFSHAGVVFPKVRKHRDAEALPLVVITETDL
TGNRVGDIAGAKRRPARRRHRVDPLALKTGDFVVHETHGIGRFLKMAERSINAGDEKSRR
EYIVLEYAPAKRGQPADQLWVPMDSLDLLSKYSGGESPTLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQAAPGHPFAPDSPWQKEMEDNFPFVETEDQMLAIDAVKTDMEATVPM
DRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLATFEERMQGFPITIRG
LSRFTSRQESKEILAGLGDGSVDIVIGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHI
KALRTNVDVLTMSATPIPRTLEMSMAGIREMTTILTPPEDRHPVLTYVGAQEEKQIAASI
RRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMGEEQLESTVQGFWDREY
DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGASL
TETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEA
VEVYKALARGEMPDATDQGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLASSTGDTDL
QLVVEEMEDRYGPIPEPVSRLLAVARLRHQARRAGVGDIIVQGTRIKIHPVDLPDSKQVR
LKRLFPGSTYRAAAKAIQVSFPKTRSGAGQPNLRDVDLLQWVADFLSKMFDLPDVSVSGK
PVESTVMSFH
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgttggcggggctgctcaaggtggcggcgaccgatccgaagcttaagggcatgctcgct
catcgtggtgagccgcagttgcatctgcagggtattgatcaggcgcggccgtgggcggtg
ggggcgttggcgcagcagtcgccggtcctcgttgtcacggcgacgggccgggaggcggag
gatctcacggcggagttgcgggcgctgctcggtgacaaggtggcgtggttcccgtcgtgg
gagacgctcccgcatgagcggctcagcccgggcgccgacacgatcggccgtcgtgcgcag
gtcttagaccagcttatcgacgcccgtgtgtccgtcgtcgtcaccgccgcccgcgggttc
tgccaacccctcctggagtcggcggagggccgcgagcctattcggctcgtccagggccag
gagtacgatttttccgccctcaccgaggagttggtgttccgcgcctaccaccacgtggac
atggtggctcggcgtggtgagttcgccacccgtggtggcattctagatatttttcccacg
accgccgatcacccggtccgcgtcgagttctggggcgacgaggtcagcgacatccgtctg
tttgccgtcgccgatcagcgcaccatccccgatgccgaggtctcccaggtggagatctat
ccggcccgggagctgcccatcaccgaggccatcgccaagcgtgccggggagctcgccctc
gagcatcccggcaacgccaccttggtggagttgttgacaaagctctccgaccgcatacct
gcggatgggatggaggcgttgatccccgcgctcgtcgataagcagatgcggaccttgccg
gagctcatgcccgcggggacgcacgtggtgcttgtggcgccggagaagatccggcggcgc
atcgccgacctggaagccaccgacgccgagttcctcgccgcgggctgggaggctgccgca
atgggcgcaaccggcccgatcgccgccgagggcctcgatttgtcggcctcctcctaccgc
tccttcgaatcgctcgaggtcagcgtccgccaggcgggcctgagctggtggaccttctcc
ccgcccggcatgttcgaaggcgcggagggggacaccctgccactcgacttcgagcctggc
cccaccccgcgtggcgatgccgacgggatcgccgccatgatgtccctcctgctcgcccac
acctcctccgggggacgggcggccttcatcgcccccgcccagggcgcgatcaaacgcatg
gtggatcgcttcgccgagcagggcatccccgcccgcgtggccacacccgggtgggaaccg
tcccccggcgaagtcaccctctaccaggcgttcagccacgccggagtcgtattccccaag
gtgcgcaaacaccgcgacgccgaagccctcccgttagttgtcatcaccgaaaccgacctc
accggcaaccgcgtcggcgacatcgccggggctaagcgacggcccgccaggcgacgccac
cgcgtcgaccccctcgccctgaagaccggcgatttcgtcgtgcatgaaacccacggcatc
ggccgcttcctcaagatggccgaacgcagcatcaacgccggcgatgaaaagagccgccgc
gaatacatcgtcctcgaatacgcccccgccaagcgcggccagcccgccgaccagctgtgg
gtccccatggattccctcgacctactgtcgaagtactccggcggcgaatccccgaccctg
tccaagatgggcggctccgattggaagaacaccaaaaagaaggcccgcgccgccgtccgc
gaaatcgccggtgaactcgtcgagctctacgccaagcgccaagccgcccccggccacccc
ttcgcccccgattctccctggcagaaggagatggaagacaacttccccttcgtcgagacc
gaagaccagatgctcgccatcgacgccgtgaagaccgacatggaggcgaccgtccccatg
gaccgcgtcatcgtcggcgatgtcggctacggcaagaccgaagtcgccgtccgcgctgcg
ttcaaggccgtccaggacggcaaacaggtcgccgtcctcgtgcccacgaccctgctcgcc
cagcagcacttggccaccttcgaggagcggatgcaaggctttccgatcaccatccgcggg
ctttcccgcttcacctcccggcaggaatcgaaggagatcctcgctggcctgggcgacggg
tccgtcgacatcgtcattggcacccaccgcctcctgcagacgggcgtgcactggaagaac
ctcggcctcatcgtcgttgatgaggagcagcgcttcggcgtcgaacacaaagaacacatc
aaggcgctgcgcaccaacgtcgatgtccttaccatgtccgcgacccccatcccgcgcacc
ctggaaatgtcgatggccggcatccgcgaaatgaccaccatcctcacaccccccgaggac
cgccaccccgtcctcacctacgtcggcgcccaagaagaaaaacagatcgccgcctccatc
cgccgcgaactgctccgcgacggccaagtcttcttcatccacaacaaagtcgccgacatc
gagaagaaggcccgcgaactccgcgacctcgtccccgaagcccgcatcgtcgtcgcccac
ggccagatgggggaggagcaactcgaatccaccgtccagggattctgggaccgcgaatac
gacgtcctcgtctgcaccaccatcgtcgaaaccggcctcgacatcgcgaacgccaacacc
ctcatcgtggaaaacgcccatcacatgggcctgtcccagctccaccagctgcgcggccgc
gtcggccgatcccgcgaacgcggctacgcctacttcctctaccccaagggcgcctcactc
accgaaacctcctacgaccggctggccaccatcgcccaaaacaacgacctcggggccggc
atggccgtcgccatgaaagaccttgagatgcgcggcgccggcaacgttctcggcgcccaa
caatccggccacatcgccggcgtcggcttcgacctctacgtccgcctcgttggcgaggcc
gtcgaggtctacaaagccctcgcccgcggcgagatgcccgacgccaccgaccaaggcccc
aaagaaatccgcatcgacctccccgtcgacgcccacatccccgagtcctacatcaactcc
gaacgcctccgtctcgaggtttaccgcaaactcgcctcctccaccggcgacaccgacctc
caactcgtcgtcgaagaaatggaagaccgctacgggcccatccccgaacccgtctcccgc
ctcctcgccgtcgcccgcctgcgccaccaagcccgccgcgccggagtcggcgacatcatc
gtccaaggcacccgcatcaagatccaccccgttgacctgcccgactccaaacaagtccgc
ctcaaacgcctcttccccggctccacctaccgagccgccgccaaagccatccaagtgtcc
ttccccaaaacccgcagcggcgccggccaacccaacctccgcgacgtcgacctcctccaa
tgggtcgccgacttcctctccaagatgttcgacctgccggacgtctccgtcagcggcaag
cccgtggagtccacggtgatgagcttccactag
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