Corynebacterium testudinoris: CTEST_05085
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Entry
CTEST_05085 CDS
T03956
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cted
Corynebacterium testudinoris
Pathway
cted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTEST_05085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cted03019
]
CTEST_05085
03009 Ribosome biogenesis [BR:
cted03009
]
CTEST_05085
Enzymes [BR:
cted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTEST_05085
Messenger RNA biogenesis [BR:
cted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTEST_05085
Ribosome biogenesis [BR:
cted03009
]
Prokaryotic type
rRNA helicases
CTEST_05085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
AKK08464
UniProt:
A0A0G3H4X0
LinkDB
All DBs
Position
1027164..1029329
Genome browser
AA seq
721 aa
AA seq
DB search
MSITDNATGGVHEPDDLSTSESQENPQGDAASAASAATGPLTIEDVIDPDVPAQGDQDTR
DADTSEATGSETEEFSDNDDTIDTAADKAVDASEDAGDDQDDEHGFANLGLPSAVLNAVK
KVGYETPSAIQAQTIPVLMEGNDVVGLAQTGTGKTAAFALPILARIDMQDRSPQALVLAP
TRELALQVADSFQSFADHLGKISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRIIDHLEK
GSLDISRLRFLVLDEADEMLNMGFQDDVERILEDTPEDKQVALFSATMPNGIRKISKQYL
QDPREISVKSETRTATNITQRFLNVAHRNKLDAITRILEVTEFEAMIVFVRTKHETEEIA
EKLRARGFSAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRISHVFNFDI
PNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRAIERATNAPLTEMELPTVDEVNES
RKGKFMDSITESLESKQIDLFRGMIKSYAEEHDVPVEDIAAALASQAQAGSDFLMKEAPP
EKRRERNDRDRGDRGGRFDRDRGGRFDRDDRGGDRGSRFDRDGDFSTYRLAVGKRHNVRP
GAIVGALANEGGLTSKDFGRITIAVDHTLVELPKDMDKSVLGRLSDTRISGQLINIEPDS
GGRPPRRFERDDRGGRGGDRGGFRGGRDRDDRGGRGGYRGNRDDRGGRDRNDRGGRGGWR
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgtacatgagccggatgacctaagcacgtcg
gaatctcaggaaaacccgcaaggtgatgcagcttctgctgcttccgccgccaccgggccg
ctgaccatcgaggatgttattgatcccgatgtcccggcccagggcgatcaggacaccagg
gacgcggatacttctgaggccaccggctccgagaccgaagaattctcggacaacgatgac
actattgataccgctgccgacaaggcagtagacgcctcagaagacgctggcgatgaccag
gatgacgaacacggtttcgccaacctcggcctgccctccgccgtcctcaacgcggtgaag
aaggtcggttacgagaccccttccgccatccaggcgcagaccatcccggttctcatggaa
ggcaacgacgtcgtcggcctcgcccagaccggtaccggcaagaccgcagccttcgcgctg
ccgatcctcgcccgcattgacatgcaggaccgctcgccccaggcgctggtcctcgccccg
acccgcgagctcgcgctccaggtcgccgattctttccagtccttcgctgaccacctcggc
aagatcagcgtcctgccgatctacggtggccaggcctacggcatccagctctccggcctg
cgccgcggtgctcagatcatcgttggcacccccggtcgaatcatcgaccacctggaaaag
ggatccctcgacatctcccgtctgcgcttcctcgtcctcgatgaggccgatgagatgctc
aacatgggcttccaggacgatgttgaacgcatcctcgaggacacccccgaggacaagcag
gtcgccttgttctctgcaacgatgcccaacggcatccgcaagatctccaagcagtacctg
caggatccgcgcgaaatctcggtcaagtccgagacccgcacggccaccaacatcacgcag
cgcttcctcaacgtcgcgcaccgcaacaagctcgacgcgatcacccgcatcctcgaggtc
accgagttcgaagcaatgatcgtcttcgtgcgcaccaagcacgagaccgaagaaatcgcc
gagaagctccgcgcccgcgggttctccgccgccgccatcaacggcgacatcgcacagaac
cagcgtgaacgcaccgtcgatcagctcaaggacggccgactggacatcctggtcgcaacc
gacgttgccgcccgcggcctcgacgtcgaccgcatcagccacgtgttcaacttcgacatc
ccgaacgacaccgagtcctacgtccaccgcatcggccgcaccggccgcgccggccgcacc
ggcgaggcaatcctcttcgtcaccccgcgtgagcgccgcatgctgcgcgccatcgagcgc
gccaccaacgcgccgctcaccgagatggaactgcccacggtcgatgaggtcaacgaatcc
cgcaagggcaagttcatggactccatcaccgagtccctcgagtccaagcagatcgacctg
ttccgcggcatgatcaagtcctacgccgaagaacacgacgttcccgtcgaagacatcgcc
gcagccctggcctcccaggcacaggccggcagcgacttcctcatgaaggaagccccgccg
gagaagcgccgcgagcgcaacgaccgcgatcgcggcgaccgtggtggtcgcttcgaccgt
gaccgtggcggccgtttcgatcgcgatgatcgtggcggagaccgtggctcccgcttcgac
cgcgacggtgacttctccacctaccgtctcgccgtgggcaagcgccacaacgtacgccca
ggtgccatcgtcggcgccctggccaacgagggtggcctcacctccaaggacttcggccgc
atcaccatcgccgtcgaccacaccctggtcgaactgccgaaggacatggacaagtcggtc
ctgggccgcctgtccgatacccgcatctccggtcagctcatcaacatcgagcccgactcc
ggtggacgccccccgcgtcgctttgagcgcgacgaccgtggtggtcgtggcggagaccgc
ggtggtttccgcggtggacgtgaccgcgacgatcgtggtggacgcggtggataccgtggc
aaccgcgatgaccgtggcggacgcgaccgcaatgaccgcggtggacgtggcggttggcgc
gactag
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integrated database retrieval system
