Corynebacterium testudinoris: CTEST_07735
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Entry
CTEST_07735 CDS
T03956
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cted
Corynebacterium testudinoris
Brite
KEGG Orthology (KO) [BR:
cted00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cted03019
]
CTEST_07735 (hrpA)
Enzymes [BR:
cted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTEST_07735 (hrpA)
Messenger RNA biogenesis [BR:
cted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CTEST_07735 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
AAA_25
ResIII
T2SSE
PhoH
ABC_tran
TsaE
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKK08977
UniProt:
A0A0G3HCS8
LinkDB
All DBs
Position
1585082..1588987
Genome browser
AA seq
1301 aa
AA seq
DB search
MTTESFSPTRADLLARLPEVSLADERAFRRRLHKAKAPKALAAINRDIDAAVDKQAHIDA
AVPEITYPEALPVSARRDDIAEAIEEHQVVIIAGETGSGKTTQIPKICLDLGRGRRGLIG
HTQPRRLAARTVAERIAEELGQDIGETVGYAIRFDDRVSPTSAVKLMTDGILLAEMQRDR
YLNAYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFANHFRDSAG
EPAPIIEVSGRTYPVEIRYEPMEFDVDGKTIDQDPLDAVCEACEELMLEGPGDILCFFPG
ERDIRDAMEAMAARKWKGVEITPLFGRLSNQEQHRVFQPHAGRRIVLSTNIAETSLTVPG
IRYVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEDDFES
RPEFTDPEILRTNLASVILQMALMRLGDIAEFPFVQPPDNRAIRDGLLLLHELGALQEHE
RDGQPTLTAVGRDIARLPVDPRMARMLVEANRLGALDDVLVIVAAMTIQDVRERPLEFQA
QADQAHARFKSPTSDFLSFLKLWDYIGQSRDDLSGNAFRKQMKKEFLHYMRIREWYDLVR
QLREVSRQLGWSTRHESADERNPDAIHQSLLAGLLSHIGARDGNTREFKGARGTRFMVFP
GSSLAKKPPEFVMAAELVETSRLWARDVASIEPTWVEKLAGPLLKHQYSEPTWSRKRASG
IAHQKSTLYGVTIIADRVVPYHVVDPEAARDMFIRHALIEGDWTTHHTFFHANVDKLESA
AEVEEKARRRGIVVDEDTLFDFYDTRLPATITTGRHFDSWWKKERRVNPDLLDFDPDALV
GADAQAITEEAFPDRWSTGSLTFDLRYRFEPGHPQDGVSVLIPVPLLAGLDTEGFDWLVP
GLREELITELLRTLPKELRRTVVPAPDFAARILPRLIPYAGTLVGQMAEVLHTMGRPAID
AASFRPSALPPHLKMTYAAVDKRGKVIDADKDLPALVARQAGSITSSVSRVGRKAESKAV
PEWTEDSLGAIAEEVSTVVDGHEVMAYPALVATPDGVEVRVHPTKAAADSSMLTATLTLL
LREISVGTSPMVKGLPLQQRVAVDNYPHGGATGLVDDARVAAVRDLMMENGGPVRDPDEF
AALRDTIKPQVAGAVRRAVVALAPALVDYHNVSEELSRWDGEAIDDMKAQLAFLLPKNAI
TLHGMQHLRHLPRYLQGIRIRLEEMSLDPGKDADRQDEIEQAQTYLDIALAKLPAGRAKT
REVKDIRWMIEELRISLFAQRLGTARPISLRRIEKAVDKLR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactacagaatctttctcccccacccgcgccgatcttctggcccgcttgcctgaggtg
tcgcttgccgacgagcgcgccttccgccggcgcctgcacaaggcaaaggcgccgaaggcg
ctggctgcgatcaaccgtgacattgacgcggccgtcgacaagcaagcccacatcgacgct
gctgtgccggagatcacctaccccgaggccttgcccgtatcggcccggcgggacgacatc
gccgaggcgatcgaggaacaccaggtggtcatcatcgctggtgaaaccggttccggcaag
acaacccagatcccgaagatctgcctcgacttggggcgcgggcgccgcggcctcatcggc
cacacccaaccgcgccgtctcgctgcccggacggtcgccgaacgcatcgccgaggaactg
ggacaggacatcggtgagaccgtcggttacgcgattcgtttcgacgaccgcgtctccccc
acctccgccgtcaagctcatgaccgacggcatcctgctcgcagaaatgcagcgcgaccgc
tacctcaacgcctatgacaccatcatcatcgacgaggcgcacgaacgttccctcaacatc
gacttcatcctcggctacctgcgtcaactcctgccgaaacgcccagacctcaaagtgatt
atcacctcggccacgatcgatcccgagcgttttgccaaccacttccgcgattccgccggt
gaacccgcgccgatcatcgaggtctccgggcgaacctaccccgtggaaatccgctacgag
ccgatggagtttgacgtcgacggcaaaaccatcgaccaggacccactcgacgcggtatgc
gaagcctgcgaggaactcatgctcgagggccccggagacattctgtgcttcttccccggc
gaacgcgatatccgcgacgccatggaggcaatggcagcccgtaagtggaaaggcgtcgag
atcactcccctcttcggccgcctgtccaatcaagagcagcaccgcgtgttccaacctcac
gcgggtcgtcgaatcgtgctgtccaccaacatcgccgaaacctccctgaccgttccaggc
atccgctatgttgtcgacaccggcaccgcccgaatctcccggtactccacccgcaccaag
gtccagcgccttcccatcgagccgatttcgcaggccagcgccaatcagcgttctggccgc
tgcggccgcgtggccgatggcatcgctatccgtctctactcggaagatgacttcgagtcg
cgccccgagttcacggacccggagattctgcgcacgaacctcgccagcgtcatcctgcag
atggcactcatgcgcttgggcgatatcgccgagttccccttcgtccaaccaccggacaac
cgcgctatccgcgacggcctcctgctcctccacgaactgggcgccctgcaggagcacgag
cgcgacggccagccaacgctcacggccgtcggccgcgatatcgcccgcctacccgtcgat
ccgcgcatggcgcgcatgctcgtcgaggcgaaccgactaggagcgcttgacgacgtcctg
gtcatcgtcgccgcgatgaccatccaggatgtccgcgagcggccattggagttccaggcc
caagccgaccaagcccacgcccggttcaagtccccgaccagcgatttcctctccttcctc
aagctgtgggactacatcggccaatcacgtgatgatctcagcggcaatgccttccgcaag
caaatgaagaaggaattccttcactacatgcgcatccgcgagtggtacgacctcgtccgc
cagctccgtgaggtctcccgacagttgggctggagcacccgccacgaatccgctgacgag
cgcaatcccgacgctatccaccaatccttgctcgctggattgctctcccacatcggcgcc
cgcgacggtaacacccgtgagttcaagggcgcccgcggcacccgcttcatggtcttcccc
ggctcctccctggccaaaaagccaccggagtttgtcatggccgccgagctcgtggaaacc
tcccgcctgtgggcgcgcgatgttgcctccatcgagcccacctgggtggaaaaacttgct
ggccccctgctcaaacaccagtattccgagccgacgtggtcgcgcaagcgcgcctccggc
atcgctcaccaaaagtcgaccttgtatggcgtgaccatcatcgctgaccgagtggttccc
taccacgtggtcgaccccgaggccgcccgggacatgttcatccggcatgcgctcatcgaa
ggcgattggaccacccaccacaccttcttccacgcgaatgtggacaagctcgaatcagcc
gccgaggtggaagaaaaggctcgccgccgcggcatcgtcgtcgacgaagacaccctcttc
gacttctatgacacccgcctgcctgccacgatcaccaccggccgccacttcgactcctgg
tggaagaaggaacggcgagtcaaccccgacctcctcgattttgatccagacgcactggtc
ggcgccgacgcccaagcgatcaccgaggaagccttccccgaccgctggtccaccggctca
ctcaccttcgacctgaggtatcgattcgagcccgggcacccacaagacggagtcagtgtg
ttgattccggttcccctgctcgcagggctggataccgaaggctttgattggctcgtccca
ggactcagggaagaactcatcaccgagctcctgcgcactctgcccaaggaactacgccgc
accgtggtgcccgccccggatttcgccgcgcggattcttccccgcctcatcccctatgca
ggaactttggtgggacagatggccgaggtcctccacaccatgggtcgcccggccattgac
gccgcctcgttccgcccctccgcccttccaccacatttgaagatgacctacgcggcggta
gataaacgcggcaaagtcatcgacgccgacaaagatctgcccgccctcgtcgcacgacag
gcaggatccatcacgtcctctgtcagtcgcgtcggccgaaaagcagagtcgaaagccgtt
cctgagtggaccgaggactccctcggcgccatcgccgaagaagtctccactgtcgtcgac
ggacatgaagtcatggcctatcccgccctggtggcgacccctgatggggtcgaggtgcgg
gtacatccgaccaaggcggccgctgatagttccatgctcaccgcgacgttgacgctgttg
ctccgcgagatcagcgtgggaaccagccccatggtcaagggcctgcccttgcaacaacga
gtggccgtggacaactacccgcacggcggtgccactgggctcgtcgacgacgcccgagtg
gctgccgtgcgtgacctcatgatggaaaacggcggccccgtccgagatccggacgagttc
gccgcgctgcgagacaccatcaagcctcaggtcgcgggggctgtgcgacgcgccgtcgtg
gcactggctccagcattggtggactatcacaacgtgtccgaggaattatcccgttgggat
ggtgaggcgatagacgatatgaaggcccagcttgccttcctgctgccgaagaacgcgatc
acgctccatggaatgcagcatcttcgccacctcccccgctacctccaagggatacgcatt
cggctagaggagatgtccctggacccgggcaaggatgccgaccggcaggacgagattgag
caggcgcaaacctacctcgacatcgcattggccaaactccccgcggggagagccaaaacg
cgagaggttaaggacatccgttggatgattgaagagctgcgcatcagcctcttcgcgcag
cgattgggcacagcccgtcccatttccttgcggaggatcgagaaagcggtagataagctc
cgctag
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