Cryptococcus tetragattii: 91988833
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Entry
91988833 CDS
T10981
Symbol
I308_101975
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cteg Cryptococcus tetragattii
Pathway
cteg03013
Nucleocytoplasmic transport
cteg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cteg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
91988833 (I308_101975)
03015 mRNA surveillance pathway
91988833 (I308_101975)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cteg03019
]
91988833 (I308_101975)
Enzymes [BR:
cteg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
91988833 (I308_101975)
5.6.2.5 RNA 5'-3' helicase
91988833 (I308_101975)
Messenger RNA biogenesis [BR:
cteg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
91988833 (I308_101975)
mRNA cycle factors
Common to processing body (P body) and stress granule
91988833 (I308_101975)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
NPHP3_N
DEAD
AAA_22
Helicase_RecD
nSTAND3
AAA_16
PhoH
AAA_25
Ribosomal_S13_N
T2SSE
Motif
Other DBs
NCBI-GeneID:
91988833
NCBI-ProteinID:
XP_066615303
LinkDB
All DBs
Position
3:905961..909875
Genome browser
AA seq
1084 aa
AA seq
DB search
MEFPNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQLGDLHLGETTSGHAAVG
QGYIDDFDEEIERNSFGEGVEHACNYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNH
LVKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSS
RDINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLED
AEAQSGEEEMQPILLKYEDAYQYQNILGPLVKIEADYDKRMKESQTENDITIRWDMGLNQ
KRLAWFCMPKLESGEVRLAVGDELKLKFAGTTNSVGIKGLQAFNKGGWGSSGDAVWEGVG
SVVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVS
GYIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGK
TVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHLTGLKVVRLAAKSREALDSSVDF
LSLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCV
GAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARA
GLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFP
WPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEG
QRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR
MNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKK
SLAAAMDPFKRRETSAAEFLSKNVGHGHGQGHGQSSVTSRFDPAYYRTHNPLSFIPPDAQ
SVVSQALTSSAFPLFGAEGGGVGGKNKTYTGYASSVISQQPMDSGTAQGHRVAGQSQFDR
FANVGGDNMMGMGMGNMMGMGMGKGRRLSIGSEAASASMYAYGYKAGEDDTQSIAPSQAG
MTEF
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcccaactttgaaggggcatcacagtacggtccagacatcgatgacaacact
tcattatactcgtcaatcccgccttcagtagtgacagcgccaactattagtggcgatatt
gctagtcagctaggcgaccttcatctcggcgagactacgtcagggcatgcagcagtcggt
caaggctatattgacgactttgacgaagaaatagagcgaaattcatttggagaaggggta
gagcatgcttgcaactactgtggtattcataatccccaatgtgttgtaaagtgtcttcac
tgtaataagtggttctgcaattctcgtggcaatacatctgcctcacatatcgtaaaccat
ttggtcaaagcgaagcacaaagaagtgatactacacaaggaaagcgctcttggagatacc
atcccagaatgttacaactgtggaagtaaaaatgtgttcatgttaggatttattccggcg
aaaagtgatactgtcgttgttttactctgccggcaaccctgtgcagctctgacaagctcc
cgggatatcaactgggatacctctcaatggtcagctatcattgatgatcgtcaatttctt
tcctggctcgtcaaggtaccatcagaggctgagcagcttcgagcgaggcaaatttcttta
gcccagatatcaaaacttgaagaactttggagagaaaatcccaatgcaaaacttgaggat
gcggaggctcagtctggtgaggaggagatgcaaccgatcttgctcaaatatgaggatgcg
tatcaatatcagaacattcttgggcctctagtcaagattgaagctgattatgacaagcgc
atgaaagaatcacaaactgagaatgatatcacgatacgatgggatatgggtctcaatcaa
aagcgtcttgcttggttttgcatgccgaagctagaaagcggagaggtgagattggcggta
ggtgacgagctgaagctcaaatttgcggggacgaccaacagcgtcgggatcaagggtctc
caggcgttcaacaaagggggttggggaagttctggggatgctgtgtgggagggagttggt
agcgtcgtcaagataccgaacaatgcatcggacgaaatctgcttggagcttcgaaggaac
gacggagtgccttttgactgcactcatggcttctctgtcgactttatctggaaatcaacc
agtttcgacaggatgcaggcagccatgaaaacgtttgcgatcgacgagaagagtgtcagc
ggctatatctatcataaattgctcggacacgaagttgaaccccaagtgctgcgtacccaa
atgcccaaacgttttgctgcacctaatcttccggagctcaaccactcgcaaatgtctgcc
gtcaaggccgtattgcaaaaacctctgagtctcatccaaggccctccaggtaccggaaaa
acagtaacttctgcttctatcgtgtatcacctcgccaagatgaaccctggccaggttttg
gtatgcgcgccttccaacgtagctgttgaccatctttgcgaaaagatccacctgacgggt
ctcaaggtcgtgcgattagccgccaaatcacgagaagcgctcgattcatcggttgacttc
ctttccctccacagtcaagtagccaatgcggacacacaccacgagttgcagaaacttatt
cagctgagaaacgaccaaggtgaattaagtcagagcgacgaaagaaagtataaagcattg
gtcaaagcgtgtgagaaggacattttgaacgcggcagatgttatttgcactacatgtgtc
ggtgctggcgatcccaggttggccaagtttaaatttagaacagttttgatcgatgaagcc
actcaatctgccgagcctgaatgtatgatccctcttgttatggggtgtaagcaagctgta
cttgtaggagatcaccaacaattgggacctgttattatgaacaagaaagcagctcgagct
ggtctttcccaatcgctgtttgaacgactcgttatcctgggcaaccaccctatccgactg
caggtgcaataccggatgcacccctgcctttccgagttttcatccaacttgttctacgag
ggcactttgcagaatggtgtcacggcgccagaaaggctgcgtaagaatgtagatttcccc
tggccagttgcggacactcccatgttcttccatcagaaccttggtacggaggaaatatca
tccagcggaacatctttcctcaacagaaccgaggcttccaatgttgaaaagatggtgacc
aagtttttcaagtctggtgtcttgcccaatcaaattggtgttattacgccttatgaagga
cagcggtcatacattgcgtcgtacatgcagctgcacggctcgctgaaaaaggatctgtac
aaagaggtcgaggtagcgagtgtggatgcgttccagggacgtgagaaggattatatcatt
ttgagttgtgtgagaagcaatgagcaccagggtattggatttttaaatgatcctagaagg
atgaatgtggcgcttacccgtgccaagtacggcgtcgtgatattgggtaatccaaaggtg
ttgagcaagcaccctctttggctttacctcctttcgcactacaaggagaagggatgcttt
gttgaaggtcctctcagtaaccttcagccgagtatggtccagttcagccgaccgaaaaaa
tctttagcggcggctatggaccctttcaagagacgtgaaacttctgctgctgaatttctc
agcaagaatgtcggccatggccatggccaaggacatggacaatcatccgtcacgagccgt
ttcgaccctgcgtattaccgcacccataacccgctttcatttatcccgcctgatgcccag
tcggttgtcagccaagcattgactagctctgccttcccattattcggcgctgagggtggg
ggcgttggtgggaagaacaagacgtatacgggttacgcatcaagtgtcatctctcagcaa
cccatggactctggaaccgcccagggccatagggtagcaggccaatcacaatttgacagg
tttgccaatgtcggtggggacaacatgatgggaatggggatgggcaacatgatggggatg
gggatggggaaggggaggcggctttcgatcgggagcgaagcggcaagcgcgtcgatgtat
gcgtacggttacaaggcgggggaagatgatacgcagagtatcgcaccgagccaggctgga
atgaccgaattttag
DBGET
integrated database retrieval system
