Cryptococcus tetragattii: 91991814
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Entry
91991814 CDS
T10981
Symbol
I308_104958
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cteg Cryptococcus tetragattii
Pathway
cteg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cteg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
91991814 (I308_104958)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cteg03019
]
91991814 (I308_104958)
Enzymes [BR:
cteg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
91991814 (I308_104958)
Messenger RNA biogenesis [BR:
cteg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
91991814 (I308_104958)
mRNA degradation factors
3'-5' decay
Ski complex
91991814 (I308_104958)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
TerB_C
EpuA
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
91991814
NCBI-ProteinID:
XP_066612906
UniProt:
A0ABR3BP26
LinkDB
All DBs
Position
8:<1165317..>1170215
Genome browser
AA seq
1284 aa
AA seq
DB search
MEQATDLEDSVFLELLNTAANPSSVDAIPSDQLAASLGIDGPLNREQALELLENEVLAPA
HKFQGHELGYWQVQPPISLPTPHLTLSPLYQTHTVAPSFRGINGEFTHWREALAPKPPAH
PTLSSSTTRAPGSLQNFVRGKGSYAPFLPGGLEAAAKLEEDEDEDEDEDEEVGWKTRAPG
MKRGAKLDGVDDFLAEMLGQQSITTKAKRRRRDGEFASPQLTVSRLGDKDEDVDGIDLKP
ARPSDRNIDDLLPVGRLPAPPSSKKQFKAVAKKDWAHVVDVNQKLENFSELVPEMAKEYP
FELDNFQKEAVYRLELGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQ
KFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVIFDEVH
YVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPMRPVP
LEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPLQRTGGRGGAPV
KSKDLPTGKNAPFTRVGAGRNHTNRGGGNGPPQAAFGGGRGGRGGGRGGFGGSSRPSHVL
DQNIWTHLISYLKKNTLLPVVNFVFSKKRCEEYAQTLSLDLCTAKEKSEVHITWERALTR
LKGEDKNLPQILRMRELLGRGIGVHHGGLLPLVKEVVEILFARGLVKVLFATETFAMGVN
MPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTGTVIILSGDELPSVEELN
EMMLGVPNRLSSQFRLTYNMILNLLRVEALKVEEMIKRSFSENATQKMAPEQQRVIAQTE
KELAKLPKLECDVCNADIDAFYNLSTEASRLNAQFLKRASWSNQSGKLFVPGRVVVLRNA
HFPGNLAVILGNHPNLGPDGQRPDVKAFRVLVLVTPGQKSCKEDLSVEELTPRWPPILPK
GSFPNPTAERTVVDTSSISFVINHILKYDFYRLNNRESPSDIQQALNDLSKLHGELSVMP
ELPEADWSRLRDIDIQSLLKERTNAAGRLSKLGCQLCENFADHYATLHERKQVEQRIQKL
KLQLSDQNLELLPDYESRVEVLKRLSFIDENATVLLKGRVACEINSAPELILTELILENI
LADYTPEEVVALLSIFVFVEKTESQPIIPTKLQDGLDVIYNIAEQVEREQDSCQVQHDEF
ATKYKPGLVEVVYEWARGMPFNEITNLTDVPEGTIVRVITRLDETCREVRDAARVIGDAD
LFKKMEEAQSLIRRDIVFAASLYL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggcgactgatctcgaagattcggtctttctagagctcctcaatactgccgcc
aatccttcttctgtcgatgcaataccgtcagaccagctcgccgcatcattagggatcgat
ggccctttgaacagagagcaagccttggaattattggaaaatgaagttttggctccagca
cataaattccaagggcacgaacttggatactggcaagtgcaaccacccatcagtcttcct
acgccgcacttgaccctttctcctctgtatcagacgcacactgtagctccgtcgttccga
ggtatcaacggggagttcacgcattggcgagaagctcttgctcctaaacccccagcccat
cccaccttgtcttcatctacgaccagagctcctggttctctgcagaatttcgtcagggga
aagggatcatatgctcctttccttcctggtggtttggaggctgccgctaaattggaagaa
gatgaggatgaagacgaagatgaagatgaagaagtagggtggaaaacaagggcacctgga
atgaaaagaggtgccaagctcgatggagtggatgatttccttgctgaaatgctgggccag
cagtcaataactacaaaggccaagagacgtcgacgggatggcgaatttgcttcacctcag
ttgactgtctcaaggctaggtgacaaggatgaagatgttgacggaatcgatctcaagcct
gctcgtccttcagataggaacatcgatgatctattaccagtaggacgccttcctgctcct
ccatcttctaagaaacagtttaaggccgttgcaaagaaggattgggcccatgttgtggat
gtcaatcaaaaactggagaatttcagtgaactggtacctgaaatggcaaaagagtatcct
ttcgaactcgataacttccaaaaagaagctgtttacagactcgaactgggagacagtgtt
ttcgttgctgcccatacatctgcaggtaaaacggtcgttgctgaatatgctattgccctt
gctgcgaaacatatgaccaaggccatttatacttctcccatcaaagctctttcgaatcaa
aaattccgagacttcaaaaccacgtttgagccctcaactgttggtatcctgacgggtgat
gtccaaatcaatgccgaaggaagctgtctgattatgacaacggagatcttgagaagcatg
ttgtacaagggtgctgaccttatccgagatgttgagtttgtcatcttcgatgaggtccat
tacgtcaatgatgccgagcgaggtgtagtttgggaagaggttattataatgcttccagaa
cacgtcaacatcatcttgctttctgccactgtaccaaacaccaaggagtttgcagactgg
gttgggcgaaccaagaagaaggacatctatgtcatctctactcctatgcgacctgtcccc
ctagaacacttcctctgggccggccgagaaacccacaaaatcgtcagctcgcaatccaag
tttctcatggaaggatactcctcagctagcgatgctcttcggcgaaaacaggataaagaa
agagaagccaatggcttgccacctctacaacgtaccggcggtcgaggaggagcgccagtt
aaatcgaaggatctgccaacggggaagaacgcaccctttacccgtgttggagctggcagg
aaccacaccaatcgtggaggtggtaatggcccaccacaagctgcgttcggcggtggacga
ggcggacgtggaggcggtcgaggcgggtttgggggtagttcacgtccttctcacgtgctc
gatcaaaatatttggactcatctcatcagctacctcaagaagaacaccctcttaccggtc
gtcaactttgtgtttagcaagaagagatgtgaggagtatgcgcaaacgttaagcctagat
ctttgtaccgcgaaagagaagagtgaagtgcatattacttgggaaagggcattgacgcgg
ctgaagggtgaggataaaaaccttcctcagattttgcgtatgcgagaactactgggccga
ggtatcggtgttcaccacggtggtcttttgccgttagtgaaagaggtcgtcgaaatcttg
ttcgctcgaggccttgtaaaggtcctctttgccaccgaaacctttgccatgggtgttaat
atgcccgcaaaatcggtcgtgttctctggcattcgtaaacatgatggcacttctttccgc
aaccttcttcctggagagtacactcaaatggctggtcgagccggtcgtcgtggtctcgat
accacgggaactgtcattattctcagcggcgatgagcttcctagtgtcgaagagttaaac
gagatgatgcttggtgtgcccaacaggctctcatcgcagttcagattgacatataacatg
attttgaacttgctgagagtagaggcgctcaaggtggaggagatgattaagagaagtttc
tcagaaaacgcgacgcaaaagatggcgccagagcagcagagggtcatcgctcaaacggag
aaagaactcgcgaagcttcccaagcttgagtgtgatgtttgcaatgccgatatcgatgct
ttctataacctctcaactgaagcttcacgactcaacgcgcagttcctcaagagagcttct
tggtccaatcaatctgggaagctgtttgtcccaggcagagtggtggttttacgcaatgct
catttccctggcaatcttgctgtaatcttgggtaatcatcctaaccttgggcctgacggc
cagcggcccgatgtaaaggcgtttagagtccttgtgcttgtaacaccggggcagaagtcc
tgcaaagaagatctttcggtagaagaattaactcctcgttggccgcctatcctcccgaaa
ggatcattccccaaccccactgccgaacggacagtggtcgacacttcctctatctccttc
gtgattaatcatatcttgaagtacgatttctatcgcttgaataatagagaatctccttcc
gatattcagcaagctttgaatgacctcagcaaacttcatggagagctttcagtcatgcct
gaactgcctgaggccgactggtcaagattgagagacatcgatatccagtcgttgcttaag
gaaaggacaaatgcggccggcaggctatcgaaactgggctgccagctgtgtgagaacttt
gcggatcattatgccactctacatgagcgaaagcaggtggagcaacgtattcaaaaactc
aaactccaactctcagatcaaaaccttgaactgcttcctgattatgagtcccgggtcgaa
gttctcaaacggctctctttcatcgacgaaaacgccacagttcttctcaagggacgcgtg
gcttgtgagatcaactctgcacccgaactcattcttacggaactcattcttgaaaatatt
ctcgccgattacacacccgaagaagttgttgctcttctttcaatcttcgtgttcgtggag
aagacggagtctcaacccataatcccaaccaaactgcaggatggtctagacgtcatttac
aacattgcagagcaggtcgaaagggagcaggactcctgtcaagttcaacacgatgagttt
gccaccaagtataaacctggtctggtggaagttgtttatgaatgggcaagaggaatgcct
ttcaacgagatcaccaacttgacggatgtaccggaaggaacaatcgtgcgagtaattacg
aggttggatgagacttgtagagaagttagagacgcggcgagagtcatcggcgacgccgat
ctatttaagaagatggaggaagcgcagagtttgattcgaagagacattgtttttgctgcc
agtttgtatctataa
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integrated database retrieval system
