Citrobacter telavivensis: GBC03_16870
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Entry
GBC03_16870 CDS
T07059
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ctel
Citrobacter telavivensis
Brite
KEGG Orthology (KO) [BR:
ctel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctel03019
]
GBC03_16870 (hrpA)
Enzymes [BR:
ctel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GBC03_16870 (hrpA)
Messenger RNA biogenesis [BR:
ctel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GBC03_16870 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
T2SSE
nSTAND3
NACHT
ResIII
AAA_16
AAA_11
PhoH
NTPase_1
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QFS71756
LinkDB
All DBs
Position
3042590..3046492
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFHALQQQLDSLMLRDRQRFSRRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPLITYPENLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWAMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDNWWKKVSRDTPDLLNFEKGMLIKEGA
DNISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLEEGRSLQELKDRLKGKVQETLSAVADDGIEQSGLHIW
SFGKLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWSGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK
VRAELNETVVEIAQQVEQILTAVFTINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGYKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVESVQQAWQQWFNKLPPARREDED
VKAIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttccacgcattacaacagcagctggattcactgatg
ctgcgcgaccggcagcgcttttcgcgtcgcctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggcggcaggtaaa
gttgtgctacgcgaagcagcacgaccgttgattacctacccggaaaacctgcccgttagc
cagaagaaacaggcgatcctcgaggccgttcgcgaccatcaggtggtgatcgtcgccggg
gaaaccggttcaggtaaaaccactcagttaccgaaaatctgcatggaactggggcgcggg
gtcaaagggctgataggccacacccagccgcggcgtctggcggcgcgtacggtggctaac
cgtatcgccgaagagttacagacggagccgggcgggtgcatcggttataaggtgcgcttt
agcgatcacgtcagcgacaacaccatggtcaagctgatgaccgacggtatcctgctggcg
gagattcagcaggaccgtctgctgatgcagtacgacaccatcattatcgatgaagcgcat
gaacgtagcctgaacatcgatttcctgcttggttatctgaaagaactgttgccgcgtcgt
ccggatctgaaaattatcatcacctccgccaccatcgatccggaacgcttttcgcgccat
ttcaacaatgcgccgatcatagaggtctccgggcgcacttatccggtggaagttcgctat
cgaccgatcgttgaagaggcggatgacaccgagcgtgaccagttgcaggccatcttcgat
gcggtagacgaactgggtcgagaaagtcctggcgacatcctgattttcatgagcggtgag
cgcgagatccgcgataccgccgatgcgctgaataaactgaatctgcgccatacggaagtg
ctgccgctgtatgcgcgactgtcgaatagcgaacaaaaccgcgtcttccagtcgcacagc
ggacgtcgtattgtgctggcgaccaacgtagcggaaacctcgctgacggtgccgggcatc
aaatatgtgatcgatcccggtacggcgcgtatcagtcgctacagtttccgtaccaaagtc
cagcgtctgccaattgaaccggtatcgcaggcttcagccaaccagcgtaaaggccgctgc
gggcgcgtttccgaaggcatctgtattcgtctctattccgaagatgacttcctgtcgcgc
ccggaatttaccgacccggaaattctgcgcaccaacctggcgtcggtcattttgcagatg
accgcgctggggctgggtgatatcgccgcgttcccgtttgtcgaagcgccggataagcgc
aacatccaggacggcgtgcgtctgctggaagaactgggggcgattaccaccgatgaacag
gcgacggcctataaactgacgccgctggggcgtcaactgagccagttgccggtggacccg
cgtctggcgcgaatggtgctggaagcgcaaaaacacggctgcgtgcgcgaggcgatgatc
atcacctcggcgctgtcgattcaggatccgcgcgaacgtccgatggacaagcagcaggcg
tccgatgagaaacaccgtcgcttccacgacaaagagtccgatttcctcgcgtttgtgaat
ctgtggaactatctcggcgaacagcaaaaagcactgtcgtcaaacgcctttcgccgtctg
tgccggaccgactatctgaactatctgcgcgtgcgtgaatggcaggatatctacacccaa
ctgcgtcaggtggtgaaagagttggggattccggtaaacagcgaaccggcggagtaccgc
gagatccatattgcgctgctgaccgggctgttatcacatatcggtatgaaggatgccgat
aagcaggaatataccggcgcacgtaacgcgcgcttttcgattttccccggttccggctta
ttcaaaaaaccgccgaagtgggcgatggtggcggaactggtggaaaccagtcgcctgtgg
ggacgtattgcagcgcggatcgatcccgagtgggtggagccggttgctcagcatctgatt
aagcgttcctacagcgaaccgcactgggagcgggcgcagggtgcggtgatggcgacggaa
aaggtgaccgtttacggtctgccgattgtcgccgcgcgtaaggtgaactacagccagatt
gacccggcgctgtgccgcgaactgtttatccgccatgcgctggtggaaggcgactggcag
acgcgtcatgcctttttccgtgaaaacctcaagctgcgcgccgaagtggaagaactggaa
cacaaatcgcgccgccgcgacattctggtggacgacgaaacgctgtttgagttctacgac
cagcgcatcagccatgacgtgatttccgcccgtcactttgataactggtggaagaaggtc
agccgcgacacgccggatctgctgaactttgaaaagggcatgctgatcaaagagggcgca
gacaacatcagcaagctggactatccgaacttctggcatcagggcaatctgaagctgcgg
ttgagctatcagttcgaaccgggtgcggatgcggacggcgtgaccgtacatattccgctg
ccgctgctcaatcaggtcgacgaaagtggctttgaatggcagataccgggcctgcgccgc
gaactggtgattgcgctgattaagtcgctgcccaaaccggtgcggcgcaactttgtgcca
gcaccgaactatgccgaggcgtttttaggccgcgtaacgccgctggaactgccgttgctg
gacgcgctggagcgtgaactgcggcggatgacgggcgtaacggttgaccgcgaagactgg
cactgggatcaggtgcccgatcatctgaaaatcactttccgggtggtggatgataaaaac
aagaagctggaagaagggcgctcgttgcaggagctgaaagaccggctgaaagggaaagtg
caggagacgctctcggcggtggccgatgacggtatcgaacagagcgggctgcacatctgg
agctttggaaaactgccggaaagttacgagcagaaacgcggtaattacaaagtgaaagcg
tggcccgcgctggtggatgagcgcgacagcgtggcgatcaagctgtttgataatccgctg
gagcaacagcaggcgatgtggtcaggtttgcgccgtttgctgttgttgaacatcccgtcg
ccgatcaaatacctgcacgagaagctgccaaacaaagccaaactgggtctgtatttcaac
ccgtacggcaaggtactggagctgatcgacgactgcatttcctgcggcgtggataagctg
attgacgccaatggggggccggtctggacggaagaaggctttgccgcgctgcatgagaag
gttcgcgctgaactgaacgagacggttgtggagattgcgcagcaggtcgaacagattctg
accgcggtctttaccatcaacaagcggctcaaagggcgcgtggatatgacgatggcgctg
ggcctttctgatatcaaagcgcagatgggcgggctggtgtatcgcgggtttgtcaccggt
aacggttacaaacgccttggcgacacgctgcgttatctgcaggcgattgaaaaacgtctc
gagaaactggcgattgatccccaccgcgatcgcgcgcagatgctaaaagtcgaaagcgta
caacaggcatggcagcagtggtttaacaaactgcccccggcgcggcgcgaagacgaggat
gtgaaagcgatccgctggatgattgaagaactgcgcgtcagctactttgcccagcaactg
gggacgccgtatccgatttcggataagcgtatcctgcaggcgatggagcagattagcggg
taa
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