Yamadazyma tenuis: 18245944
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Entry
18245944 CDS
T03099
Symbol
PRP40, PSN45_000935
Name
(RefSeq) U1 snRNP protein
KO
K12821
pre-mRNA-processing factor 40
Organism
cten
Yamadazyma tenuis
Pathway
cten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18245944 (PRP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cten03041
]
18245944 (PRP40)
Spliceosome [BR:
cten03041
]
Complex A
U1 snRNP components
U1 related factors
18245944 (PRP40)
Complex B
18245944 (PRP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
ChaB
WW_TCERG1
YfbR-like
SwrA
Glyco_hyd_101C
tRNA_bind
Motif
Other DBs
NCBI-GeneID:
18245944
NCBI-ProteinID:
XP_006688381
UniProt:
G3BBQ7
LinkDB
All DBs
Position
1:1940851..1942740
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AA seq
629 aa
AA seq
DB search
MAEGAWEKVVDDDGNEYFYNAITQDTSWTNPELDKTPSNWQEFTTDDGTKYYYNSESGET
TWDKPEDFVSGEDSVVQIATDDDEDAEEPEKMTELDKELESKPIVADDLSEPQTKENPST
EDAFKELLRENKVNSTWTFQDVMAKLINSAVYWSVEDSLDRKRLYDEYLMDETKKQASNK
TDVREAFKTNFDQVLESYKQKGQLTHQTRWFSVKNRLVKEDNPIFKHTVLSDGDIYSVFK
QFQDTMKSEYDSISKQKREQALSELEMYLTNINPELVSEGDDWDALYKSLQNDSRFKANK
HFNVLHKVDILELYIEKIYPQEIKKLELETEQLEKQNYTSDRKARDSFKTLLSELPIQAN
TTFKEIFPLIEDEDAFIEICGRNGSSALELFWDIVSEKQQLLKLKVDLVEGVIQQVSGTD
ESFEMSKLLASKHIFVDKLSSVKDERLEGLSFVATDEESEIDLIYDMLKKNWETKQQQKL
ESLERTLKLDVTGFEHFLLAKFHQLPVFSVVSNADEGVPDKVTIIETVENDKKAYSLKEF
DPAKLDTLKHAPEFARVFESWSALQKHSSSSRTWEDILKEAMEEFIRKLNIAESKKIQTS
KRSRPYDDSTDRKRPHDSGVKKPKVLLNY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggagcatgggagaaagtggtggacgacgatggaaacgagtacttctacaat
gccatcacgcaagacaccagctggacaaaccccgaactcgataaaaccccgtcaaactgg
caagaattcaccactgacgatggaacaaagtactactataactcagagtcaggtgagact
acctgggacaaacccgaagatttcgttagcggcgaggactctgtcgtccagatagctaca
gatgatgatgaagatgcggaggagcccgagaagatgacagaacttgataaagaattggaa
ctgaaacccatcgtcgctgatgatcttctggagccacaaacaaaagaaaacccatccaca
gaagatgccttcaaagagcttttgcgggagaataaggtcaattcgacatggacattccag
gatgtgatggccaagctcatcaatagtgccgtctactggtcggttgaagattcgctagat
cgtaagagactttacgacgaatacttgatggatgaaaccaagaaacaagcgagcaacaag
acagatgtccgtgaagcattcaagaccaacttcgaccaggttctcgagtcgtacaagcaa
aagggccagttgacccaccaaacgcgatggttcagtgtgaagaatcgacttgtgaaggaa
gataaccccatttttaaacatacagttttgtctgatggagatatttatagcgtattcaag
caattccaggacaccatgaagctggagtacgacagtatttcaaagcaaaagcgggagcaa
gcactctccgagttggagatgtacttgaccaacataaaccctgagttagtatctgaaggt
gatgactgggatgctttgtacaaaagtcttcagaacgatagccgattcaaggctaataag
catttcaacgtgttgcacaaggtggatattcttgagttgtacatcgagaaaatataccct
caggagattaagaaactcgagctcgaaacagaacaattggaaaaacagaattacacttct
gaccgaaaggcccgagacagcttcaaaaccctattgtcagaactcccgatccaagcaaat
actactttcaaggaaattttccctctaattgaggatgaagatgcttttatagagatctgt
ggacgtaacgggtccagtgctttggaattgttctgggatatagtcagcgagaaacaacag
ctcttaaagttgaaggttgacttagtcgaaggtgtaatccagcaggtttctggtaccgac
gagtcatttgaaatgtcaaagcttttggcttccaagcacatttttgttgataagctatcc
agtgtgaaggacgaacgacttgaggggttatcctttgtagccacagatgaagagagcgag
atcgacttgatttatgacatgttgaagaagaattgggaaaccaaacagcagcagaaactc
gaactgttggaacggacgttgaaactcgacgtcaccgggtttgaacactttcttctagcc
aagttccaccaacttcccgtcttcctggtggtttccaatgcagacgaaggtgttcctgac
aaagtaacgattatagagacggtggaaaacgacaaaaaagcgtattctttgaaggaattc
gaccctgcaaaacttgacaccctcaagcacgctcctgagtttgcacgtgtgtttgagtca
tggtctgctcttcagaaacacagttccagctccaggacatgggaagatattcttaaggaa
gccatggaggagtttatacgaaaactcaacatagccgagtcgaaaaaaatccagacttcc
aagcggctgagaccatatgatgactcaactgaccgtaaacggcctcacgactcaggtgtc
aagaaacccaaggtccttctcaattactag
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