Yamadazyma tenuis: 18248625
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Entry
18248625 CDS
T03099
Symbol
MTR4, PSN45_003536
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cten
Yamadazyma tenuis
Pathway
cten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18248625 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
18248625 (MTR4)
03041 Spliceosome [BR:
cten03041
]
18248625 (MTR4)
03009 Ribosome biogenesis [BR:
cten03009
]
18248625 (MTR4)
03016 Transfer RNA biogenesis [BR:
cten03016
]
18248625 (MTR4)
Enzymes [BR:
cten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18248625 (MTR4)
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18248625 (MTR4)
Spliceosome [BR:
cten03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18248625 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
18248625 (MTR4)
Ribosome biogenesis [BR:
cten03009
]
Eukaryotic type
Pre-60S particles
Helicases
18248625 (MTR4)
Transfer RNA biogenesis [BR:
cten03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18248625 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18248625
NCBI-ProteinID:
XP_006684258
UniProt:
G3AXS5
LinkDB
All DBs
Position
4:complement(992714..995905)
Genome browser
AA seq
1063 aa
AA seq
DB search
MDDLFDVFDEAPVEVPEPPIAPVNNPDTVKNTAEVVEPQEDSESQKRKLADDSASHKLKK
QTTRKPSIKAVVSDALEIEASREVAISDGLLASKPDPNGHPSGQLKLKHQVRHQVAIPPG
FPYVPISEHKRQNDARRYPFKLDPFQDTSISCIDRNESVLVSAHTSAGKTVVAEYAIAQS
LRDKQRVIYTSPIKALSNQKYRELQAEFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYR
GSEVMREVAWVIFDEVHYMRDKSRGVVWEETMILLPDKVHYVFLSATIPNAMEFAEWIVK
IHEQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMAQISDGMGEDP
GAVDGKKGKKGQTWKGGNNDGKTDIYKIVKMIYMKRYNPVIVFSFSKRDCETLALKMSRL
DFNNDDERDALTKIFNNAIGLLPESDRELPQIKNILPLLRRGIGIHHSGLLPILKEIIEI
LFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRGL
DDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMLLNLMRVEGISPEFMLESSF
FQFQSASSVPKMESQLVELTNQLSTINIDDENLIKEYYEFKVQLSKLQEDSQKIITHPGH
ILPYLQSGRVIKVKIGDMDYGWGMVQSFSKRANKRNSSAIYSDHESYLVQVFIYSLFVDS
PVNLIKSFNPDLPEGIRPSKSGEQSRAEYIPITLSSIEKISSVRLKVPADFKSSSAKRNL
LKTLKDLPKKLPDGIPIMDPVNSMKIDDDEFKTLLRKIDVVESKLLGNPLHGSVRLDELY
QKYDSKVKIETQIKALKDQILETKAVIQLDDLKHRKRVLRRLGFTTQNDIIELKGRVACE
ISTGDELLLTELIFNGTFNDLTPEQCAALLSCCVFQEKAKETPRLKPELAEPLKNLQEMA
LKIAKISKECKIEMVEKDYIESFRPELMEVTYAWCKNATFTQICKMTDVYEGSIIRTFKR
LEEMIRQMVSAAKTIGNMELETKMDKALELVHRDIVSAGSLYL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctatttgatgtttttgacgaggctccggtagaagtgcctgaacctcctatc
gctccagtcaataacccggacactgtgaagaacactgctgaagtagtagaaccccaagaa
gactctgagtcccagaaaagaaagttggccgatgacagtgccagccacaaactcaagaag
caaaccaccagaaaacccagcataaaggcagtggtttccgatgcattggaaattgaggcc
tcccgagaggtggctatctcggacgggttgttggcatccaaaccagacccaaacggtcat
ccttccggacagttgaagttaaagcatcaagttaggcaccaggttgcaatccctccagga
ttcccatatgtgccaatcagtgaacacaaacgtcaaaacgacgccaggcggtaccctttc
aagttagatccattccaagacacgtcgatttcttgtattgacagaaatgaatctgtgcta
gtgtctgctcacacgtcggctggtaaaaccgtagtggctgaatatgccattgcccagtca
ctaagagacaaacaaagagtcatctacacatcaccaatcaaagctttgagtaaccagaag
tatcgtgagttacaagcggagtttggagatgtcgggttgatgacgggagatgttaccatt
aacccagatgctgggtgtttggtgatgaccaccgaaattttgcggagcatgctttacaga
ggatcggaggtgatgagagaagtggcatgggttattttcgatgaagttcattacatgaga
gacaagtctagaggagtggtatgggaagaaactatgatcttgttacctgataaggtgcat
tatgtatttttgtctgccactattcccaacgctatggagtttgccgaatggattgtcaag
atccacgaacagccgtgccatgttgtatacaccgacttccgtcctacgcctttgcaacat
tacttgttcccggctggtggtgatggaatccacttggtggtggacgaaaagggaactttt
agagaagaaaatttccagaaagccatggctcaaatcagtgatggtatgggagaagaccct
ggggcagtagatgggaagaaggggaagaagggccaaacctggaagggtgggaataacgat
ggaaaaacagatatttacaagattgtgaagatgatttacatgaaaaggtataatcctgtg
attgtcttctctttctccaagagagactgtgagactttggcattgaagatgtcaagactc
gatttcaacaacgatgatgagagagatgccttgaccaaaatcttcaataatgccatcggc
ttattacctgagtccgatagagagttgcctcagataaaaaacatcttgccgttgttaaga
agaggtattgggatccatcattctggattgttacctattttgaaggaaatcatagagatt
ttgttccaggaagggttgttgaaggtgttatttgcaaccgagactttctcaattggtctt
aatatgcctgccaaaacagttgtttttacgtctgttcgtaagtgggatggtgttgggttc
cgttgggttagtggtggtgagtacattcaaatgtcgggtagagctggtcgtagaggttta
gatgaccgtggtattgtcatcatgatgatcgacgaaaaaatggaaccccaagtggccaaa
ggaatggtcaagggccaggccgacagattggactcagcctttcatttgggatataatatg
ctcttaaatttgatgagagttgaagggatttctcccgaattcatgttggaaagttcattc
ttccagttccaaagtgcttcttctgttcccaagatggaaagtcaacttgtggagctaacc
aaccaattatcaacaatcaatatagacgatgagaatttgatcaaagaatactatgaattc
aaggttcagttgagcaagttgcaagaggattctcaaaagatcataactcatccaggacat
atattgccctacttacaaagcggaagagttattaaggtgaagattggtgacatggattac
gggtggggaatggttcaatcgttcagtaaaagagccaacaagagaaactcatctgctatt
tacagtgatcacgaatcctatctcgtccaagtttttatatattccttgtttgttgattca
cccgtcaatttgatcaaatccttcaacccagatttaccagaaggtatcagaccatccaaa
tctggagaacaatccagagctgaatacattccaatcaccttaagttccattgagaaaatt
agcagtgtaagattaaaagttccagcggatttcaagagctcgtctgccaagagaaacttg
ttgaagactttgaaagacttacccaagaagttgccggatggtattccaatcatggatcct
gtcaatagcatgaagattgatgatgatgagttcaaaaccctcttgagaaaaattgatgtc
gttgaatccaagctcttaggcaacccattacatggatctgtcaggttggacgagttgtac
caaaagtatgacagcaaggttaagatcgaaacccaaatcaaagcgttgaaagaccagatt
ctcgagaccaaggccgttatccaattggacgacttgaagcacagaaagagagtgttaaga
aggttgggattcaccactcaaaatgatatcatcgagcttaaaggaagagtcgcctgtgaa
attagtactggagatgaactcttattgacagagctcattttcaacggtaccttcaatgac
ttgacccctgagcagtgtgcagccttgttatcatgttgcgtgttccaggagaaggctaaa
gaaacccccagattgaagcctgagttggctgaaccactcaagaaccttcaagaaatggcc
ctcaagatcgctaagatctctaaagagtgcaagattgagatggtcgaaaaggattacatc
gagagcttccgtcccgaattgatggaagttacttacgcgtggtgtaagaatgccacgttc
actcaaatttgtaaaatgaccgatgtctacgaagggtccatcatcagaaccttcaagaga
ctcgaagaaatgatcaggcaaatggtttccgccgcaaagaccattggaaacatggaattg
gaaaccaaaatggacaaggccttggaattggtgcacagagatattgtttctgctgggtcg
ttatatctttag
DBGET
integrated database retrieval system
