Yamadazyma tenuis: 18248662
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Entry
18248662 CDS
T03099
Symbol
RLR1, PSN45_003266
Name
(RefSeq) THO2 plays a role in transcriptional elongation
KO
K12879
THO complex subunit 2
Organism
cten
Yamadazyma tenuis
Pathway
cten03013
Nucleocytoplasmic transport
cten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18248662 (RLR1)
09122 Translation
03013 Nucleocytoplasmic transport
18248662 (RLR1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
18248662 (RLR1)
03041 Spliceosome [BR:
cten03041
]
18248662 (RLR1)
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
18248662 (RLR1)
Spliceosome [BR:
cten03041
]
Complex C
Other components
EJC/TREX
18248662 (RLR1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18248662 (RLR1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
DUF6096
Motif
Other DBs
NCBI-GeneID:
18248662
NCBI-ProteinID:
XP_006684503
UniProt:
G3AYU1
LinkDB
All DBs
Position
4:394639..399444
Genome browser
AA seq
1601 aa
AA seq
DB search
MNGTETQITYSYLNDELLSEFQGQGTEQLIQLIEAPAQPDVDAYELVGTVFTELIMVLED
GKLDPEAIIEFLSSCIKDEETANHFCQVLNLFPLSEPVESLIKKLHTNQKVIQPSSLAKF
LSTDTLGKLGIVPGDTLSKQLNTRKRDEYYTQKKFNLLHEEPEGFARLIVELMNILRSGE
SESQVDYAIKMVDTIIGHYSLDPNRVFDVTFDCFSNSLISNEKFIIAFYKKSLWWPQVNS
DNSSLNSLSLGGDDDLAKIIGLRLVKPSEDKAFAETTKLLIAILIKEGLVSFGSVYKFFG
PDDEQMAKLERLHKKGLEEEVFKSSANALALAAPLMDEEESEGSSTNTNKKTGDLTTEEQ
IADLLGINLKFQMLKSFLAVGLYWPSVFILTEYPFLALVDEEVGELICRLYHHMITPLYG
MHTNLLEDDLAALSKPKQIAIQRPNNEVYYQDYTPHTYLTFKATTQDYFHKRFVYFYDNW
TSGLPLIHSSEQLFQQCQGLLKFLNVQFAKDIQLFVKICKIGVSEIESSGPTDEWFTFFR
NQMFPAISVLQENSIAVENAYQILSFYPKENRFNLYSEFHQVTSKNNPYIKISYGKAEKN
TKDVLKRLSKETVRPMMRRIAKISFCNPLPCFLTILQQIESYDNLNSLVVETARYFNSYG
WDVLTLAIMMRVTASGRSNIQTNGLFERQWIQSLASFVGKICHRYPNSIDISTLLEFILK
SLHSNDTSVLTIFKEMLLSMGGLTSSNNLTLDQIYRLNSGDTLKRLIYSTINDTRYSNSK
AGTILVKNLVELDCVNEFLVLLYQMNENVTYEDNELHLKVITNRKDDLSTVMQLFCDLIN
FYVQDELFDEKLSPISKLSYTCHVPPEWVFEIWRKHMDPYSNDFLAKDMEGFKPYLGDYV
WQSLSPGLYSTFWQLSLYDVNYVDYLYISSAEKHQNSLESLETSYTKSKRAHASRQDIES
KKDAFEVVQKLVSDIPVDQQKHESHYNKVIARITEESSSWFVKNDEGVAMKMFLQYCILP
RAVHSSFDAVYSAKFVFKLFQVGVQKFSLEEYLNYLFQSRVLFGTFFTSTLTESENLGLF
FSELLIELNSWCNNETFEKLTNGLTNKEGVTLSFKGFKDLLYSYHTSLLDDLLTTLNSTD
YMCRRNSIIFLKNIIHIYPVVEDQCEQLAEVIQQIINTEEREDLKLAVNALIGHIKARQS
KWIHLWDFIEMPEAQLEVHRSKREAIANEIRKINEAKRLKEQLEYEERERIQKERAETLR
REKEAEALKVKEKQKLSYDESSQTTSTRADVRKDGVESRKDYYSKYENFSKASTPSGTRP
TSENGNDKKELPDGPSVAKDSKDKKSPSVNSSNLPSSQTSRPQTPVAKASAQPAKASAQP
VKAPVQPSKAPVQPSKAPVQPAKTVSVPRTAKPSATASGLSADNKPPRKSAVSTDRGNWN
NESRYSGNDNKGSYVPFKSAAPPKDSLSDKRQPLVPQSHLRKDFGSGSRAKAPETYDRRK
TTEGYNSRNNGYDGRKSFESYDKNYDNRKSFEGYDNRKNTQKQSSAEGNKTQKLPPPPPP
PSLPPPSGRNTHGNGTGRPDSKRKYDYDQGNGRPYDKRQRY
NT seq
4806 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcaccgaaacccaaataacgtatagctatttgaatgatgagctattgagtgag
ttccaagggcaagggaccgaacagttgatccaattaattgaggctcctgctcaacctgat
gttgatgcttacgaattggttggaactgtctttacagaattaattatggtgctagaagat
gggaaattagatcctgaagccatcatcgagtttttgtcgagctgcatcaaagatgaagaa
accgcaaaccacttctgccaagtcttgaacttattcccattgtctgaacctgtggaatct
ttaataaagaagcttcatactaatcaaaaggtaattcaaccttctagtcttgctaaattc
ctatcaaccgataccctaggaaaattgggcattgtacctggtgatactctttcaaagcaa
ttgaacactcgcaaaagagacgagtactatactcagaagaagttcaatttacttcatgaa
gaacctgaagggtttgcaagacttatagtggagttgatgaatatcttaagaagtggcgag
tctgaatctcaggttgattacgccataaagatggtagatacaatcattggacactatagc
ttggatcccaatagagtctttgatgtgacttttgactgtttctccaatagtttaatcagt
aatgaaaagttcattattgcattctacaaaaaatctctatggtggccccaagttaacagt
gacaactcctcattgaacagcctatcacttggtggagatgatgacttagccaagataatt
ggtctcagattggtcaagcctagtgaagataaagcgtttgccgaaaccactaagctatta
attgccattctcataaaagaaggcttggtaagctttggctctgtatacaaattctttggt
cctgatgatgaacagatggccaagttagaacgactccataagaagggtctagaagaggaa
gtgtttaaatctagtgccaatgctctagccttagctgcacctttgatggatgaagaagaa
tccgaaggtctgagcaccaatactaacaaaaaaactggtgacctaactacagaagaacaa
atagccgatttgttgggcatcaacttgaaattccaaatgttaaagtccttcttagctgta
gggttatattggccttctgtgtttattttgactgaatatccatttttggcattggtggat
gaggaagtaggagaattgatttgccgtttatatcatcatatgatcactcccttgtatgga
atgcataccaacttacttgaggatgaccttgcagctttgctgaagcccaaacaaatcgcg
attcaaagacccaataacgaagtctattatcaggactacactcctcacacatatttaaca
ttcaaggccacaacccaggactatttccataaaagatttgtttacttctatgacaattgg
acgtcaggattaccactaattcattcaagcgaacaattgtttcaacagtgtcagggctta
cttaagtttttgaatgtccaatttgcaaaagacattcaactctttgtaaaaatatgtaaa
ataggtgtcagtgaaattgaactgtcgggtccaactgatgaatggtttacatttttcaga
aatcagatgtttcctgcaatctcagtattacaggaaaatagtatagcggttgaaaatgct
tatcaaatattatctttctatccaaaggaaaatcgattcaacctttacagtgagtttcac
caagtaacatccaagaacaatccttatatcaagatttcatacgggaaggctgaaaagaac
actaaagatgtattgaaaagattatcaaaagaaacagtaagacctatgatgagaagaatt
gccaaaattagtttctgcaaccccttaccctgcttcttgaccattttacaacagattgaa
agttacgacaatcttaattcattggtagtggaaacagccagatactttaatagctatgga
tgggatgtgttaacgttagctattatgatgagggtcactgctagtggtagaagtaatatc
caaacaaatgggctctttgaacgtcagtggatccaatcattggcttcatttgttgggaaa
atatgccacagatatccaaattctattgatatcagcaccttgttggagtttattttaaag
tctttgcatagcaatgataccagtgttttgacaatattcaaggaaatgctcctttcaatg
ggtggcttaacaagttccaataatttaactttggaccaaatttaccgcttaaatagtggt
gacacgttaaaaaggttgatctactccaccataaatgatactaggtatagcaacagcaag
gctggaactattttggtgaagaatcttgttgagttggactgcgtcaatgaatttttggtt
ctattatatcaaatgaatgaaaacgtaacttatgaagataatgaattacatctcaaagtt
atcaccaatagaaaagatgatttactgactgttatgcaactcttctgtgatttaattaac
ttttatgttcaggatgagctctttgatgaaaagctctcgcccatctccaaactatcctat
acttgtcacgttcccccggaatgggtatttgagatttggagaaagcatatggacccatat
tcaaacgattttcttgctaaagatatggaaggattcaaaccttaccttggagactatgtt
tggcaatccttatctccaggtctctacagcactttctggcaattgtcgttgtacgatgtt
aattacgttgactacctttatatatcatcggctgaaaagcatcaaaattcacttgaaagc
ctcgaaacgtcttacactaagagcaagagagcacatgcgtctcgtcaagatatcgagctg
aaaaaagatgcttttgaagttgtgcaaaagctagtatctgacattccggtggaccaacag
aagcatgaactgcactacaataaggttattgcaagaattactgaagaatcctcactgtgg
ttcgtcaaaaatgacgagggggttgccatgaaaatgtttttgcagtattgtattttacca
agagctgtacattcgtcattcgatgcagtttattccgccaagtttgtgtttaagttattt
caagtgggagttcaaaaattctctctcgaagaatatttgaattacttgtttcaaagcagg
gtgttgtttggaacattctttacgtcaactttgacagaatcggaaaatttgggattgttc
ttttccgaattactaattgaattgaattcttggtgtaataatgaaactttcgaaaagtta
acaaatgggttgacaaacaaagaaggcgttacattgtccttcaaaggattcaaggattta
ttgtattcttatcatactagcttgttggatgatttattgactacattgaactctacggac
tacatgtgtcgtagaaactcgattattttcttgaagaatataattcacatatatccagtg
gtagaagatcaatgtgaacaattggcggaagtaattcaacagataatcaacaccgaggaa
agagaggatcttaagcttgcagtcaatgctttgattggacatattaaagcaagacaaagt
aaatggatccacttatgggatttcattgaaatgccagaggctcaacttgaagttcatagg
tccaagcgtgaagcaattgctaacgagattcgtaagatcaacgaagcgaagagactcaag
gagcagctagaatatgaagaaagagaaagaatacagaaagaaagagctgaaactctcaga
cgcgagaaggaagcggaggctctaaaagtgaaggagaaacaaaagcttagttatgatgaa
agttctcaaactacatcaactcgggcagatgttagaaaagatggagttgaatctagaaaa
gactattattccaaatacgagaatttcagtaaagccagtactccttctggaacacgtcct
acttctgaaaatggaaatgacaagaaagaactaccagatggaccttcagttgccaaagac
tcaaaagataagaagtctccttccgtgaattcttcaaatctcccttcaagtcaaacctct
aggccacagactccagttgccaaagcttccgcacagcctgccaaagcttccgcacagcct
gtcaaagctcctgtacagccctcaaaagctcccgtacaaccttccaaagctccggtacag
cctgctaaaacagtaagtgttcctagaaccgcaaagccatcagcaacagcctcgggtcta
tctgccgacaataagccacccagaaaactggccgtttccacagaccgtggcaactggaat
aatgagtctagatattctggcaatgataataaaggctcttatgtgccttttaaatccgct
gcacctccaaaagattctttgtctgataaacgtcaacctttggttccacagctgcatttg
aggaaggattttggttctggctccagggcaaaggctcccgaaacttatgatagaaggaaa
accactgaaggttacaatagcagaaataacggctatgatggcaggaagagctttgaaagt
tacgataaaaactatgataacaggaagagctttgaaggatatgataacaggaagaatact
caaaagcagtcttcggcagaaggtaataaaactcaaaagcttcctccccctccacctcct
ccttcacttccacctccaagtggcagaaatacgcatggtaatggaactggtagacctgat
agtaagagaaaatatgactacgatcaaggcaatggcagaccttatgacaagcgtcaacga
tactaa
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integrated database retrieval system
