Yamadazyma tenuis: 18248983
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Entry
18248983 CDS
T03099
Symbol
msh2, PSN45_004233
Name
(RefSeq) MSH2 protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
cten
Yamadazyma tenuis
Pathway
cten03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18248983 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cten03400
]
18248983 (msh2)
DNA repair and recombination proteins [BR:
cten03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18248983 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
EssA
AAA_22
AAA_27
DUF4168
Motif
Other DBs
NCBI-GeneID:
18248983
NCBI-ProteinID:
XP_006687277
UniProt:
G3B6J7
LinkDB
All DBs
Position
6:39667..42576
Genome browser
AA seq
969 aa
AA seq
DB search
MSSSRPDLKFGDNLEERRYYSRFSDLPAKNPNLIRFTDHNNKDYFTAIDDDATLIADAIF
KTQSVIKTNQNNKNKYVTIAPQVFLNNVLKYCLIENNYKVEIYDHKTFSLIAMGTPGNLE
AISNEYNIDLESMVADASSPVTAAVKFQQQGTGKKVGVCLVDLSNTSIRVSEFEDNDLFS
NLESLLIQLGVKEVIVPSNYDPENKQLGDVNKLFQTLDKVGVVMSTLKASFFSPKDLEQD
LVKILSNEDTNVELILGAKGIASNDYQLSFACLNALIGYLGLLGDGEETKTFSIDKYDLE
SYMKLDSSTLNALNIFPIKQSGGYNMNIKSNQISSIFELLNKCKTNSGSRLLSQWLKQPL
TDHIAISERQMLVEKLINDTNLRVFIDQEFMSQVPDIKRLIKRINSNLKKNGQDNKKLED
VVRLYQLFLNLPNLIEILKMSSDDESDSLRTLIEKNWLEPVTEKFEKLRQFQGLVETAID
LSPLTSANTVSDLNTDFNINPDFEKSLKDVNRRLLQKEGEIKQQHELVADDLNIDIDKKL
KLENHQIHNWCFRVTRNDSVVLRGTNYTELQTVKAGVFFTNKELSALSKEHASILQEYND
KQKEIIQEILLITLTFETIFLELSTSLSQIDVLLAFANTSILSPIQYIKPNLVPLSERID
DETFGQRLVDLKNSRHPILEAQDDLNFIPNDVKLSNKDKSFAIITGPNMGGKSTYIRQVG
VIALMSQIGCFIPCDEPGTLPIFDSILSRVGAGDSQLKGLSTFMIEMLETSSILSNATHN
SLIIIDELGRGTSTYDGFGLAYSISEYIIKSKQCFTLFATHFHELTELNTKYDKIQNLQV
KALIGNGEEITLVYKVEPGISSKSFGINVAELVKFPQKIINMAKRKSSELQHEECQDEYI
KIKKSKCSSDEINVGIEALNNILREWKSSCFKDNRLLFSTDETINKLKQISSGHKAADDK
FVSEIMAML
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagctcacggccagatctaaagttcggcgacaacttagaagaacggcggtactac
tcgcggttctcagatttgcccgccaagaacccaaacctcattaggttcacggaccacaac
aacaaggactatttcaccgccatagacgatgatgcgaccttgattgcagacgccattttc
aaaacccagtctgtcatcaagaccaaccagaacaacaagaataagtatgtcaccattgct
ccccaggtgttcttaaacaatgtcttgaagtattgtctcatcgaaaacaactataaggtt
gaaatctacgatcacaaaacgttctcgctcattgctatgggcaccccaggaaaccttgaa
gctatttccaacgaatacaatatcgacttggagagtatggttgcagacgcatcctctccc
gtgaccgctgccgtgaaatttcaacaacagggaactggaaaaaaggtgggggtgtgctta
gttgacttatccaacacttccatcagggtgagtgagtttgaagataatgacttgttttct
aacttggaaagtttattgatccagcttggcgtcaaggaggttattgtgccctctaactac
gacccggagaacaagcaacttggtgatgtgaataagttgttccagaccttggataaagtt
ggtgtagtcatgagtacgttaaaggcgtcgttcttcagtcccaaagacctcgaacaggat
ttggtcaagatattgagcaacgaagacaccaacgtggaattgattttaggtgcaaaaggt
attgcctccaacgactaccaattgtcttttgcgtgtttgaatgcgttgattggctacttg
ggcttgctcggtgacggggaggaaacgaagacattttccatcgacaagtacgatcttgaa
agctatatgaagttggactcttccactttgaatgcgttgaatatttttccaatcaaacaa
tctggaggctacaatatgaacatcaagtctaaccagatcagctcgatctttgaattgttg
aataaatgtaagaccaacagtggttcacgtcttttgtcccagtggcttaaacagcctctt
actgaccatatcgccatatctgagagacagatgttggtggaaaaattgatcaacgatacg
aacttgagggtgttcatcgatcaagagttcatgagccaagtccccgacatcaagagactc
attaaaagaatcaattccaacttgaagaagaatggtcaggataacaagaagttggaagat
gtggtcagattataccaattattccttaacttacctaacttgattgaaattttgaaaatg
tccagcgatgatgaactggactcattaagaacattgattgaaaagaactggttggagccg
gtgactgaaaagttcgagaagttaagacagttccaaggtttggtcgagaccgctatcgac
ttgtcgcctttaacttccgctaacactgtcagcgatttgaatacggacttcaatattaat
cctgattttgaaaagtccttgaaggatgtcaatcgaaggttacttcaaaaagagggggag
atcaagcaacagcatgaattggttgccgatgacttaaacattgatattgataagaaattg
aagttggaaaaccaccaaatccacaactggtgttttagagtgactagaaacgattccgtt
gttttgagaggaaccaactacacggagttgcaaaccgtcaaggcaggtgtttttttcacc
aacaaagaattgtcagctttgtccaaggaacacgccagtatccttcaggaatataacgac
aaacaaaaggaaataatccaagaaatcttgttgatcaccttgacgtttgaaaccatattt
ctcgagttgtcgacgtctttgagccagatcgatgttttattggcgttcgcaaacacttca
attctttccccaattcagtatatcaagccaaacctcgtacccttgagcgagcgtattgac
gatgaaacttttggccaaagattagttgacttgaagaactccagacatccaatcttagag
gcccaagacgacttgaatttcattccaaatgacgtaaaattgtccaataaggataaaagc
tttgccataatcaccggacccaatatgggtggtaagtccacctatatcaggcaagtggga
gtaatagcattaatgagccagattggatgtttcattccttgtgatgaacccggtacatta
ccgatttttgactctatactctcaagagttggagctggtgactctcaattgaaaggatta
tcgacatttatgattgaaatgttagaaacctcgtcaattttgtcgaatgccactcataac
tcattgattatcatcgatgaattgggaagaggtacttcaacatacgatgggtttggtttg
gcgtactccatcctggagtacatcatcaagtctaagcagtgtttcacattatttgcaaca
cacttccacgaactcaccgaattaaacaccaaatacgacaagattcagaacctccaggtc
aaggcattgattggaaacggagaagagatcacgttggtgtacaaggttgaacccggtatc
tcgtccaaatcgtttggtatcaatgtggccgaacttgttaagttcccgcagaaaatcatc
aatatggccaagagaaagtcaagtgagttacaacacgaagagtgtcaagatgagtatatt
aagatcaaaaaatccaagtgttcactggatgaaatcaacgttggaattgaagccttaaac
aatattttgagagagtggaagtcttcgtgcttcaaagacaatcggttattattttcaacc
gatgagaccatcaataagttgaaacagatctcctctggtcacaaggctgcagacgataag
tttgtgtcagagatcatggccatgttataa
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