Yamadazyma tenuis: 18249322
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Entry
18249322 CDS
T03099
Symbol
SUB2, PSN45_001326
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cten
Yamadazyma tenuis
Pathway
cten03013
Nucleocytoplasmic transport
cten03015
mRNA surveillance pathway
cten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18249322 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
18249322 (SUB2)
03015 mRNA surveillance pathway
18249322 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
18249322 (SUB2)
03041 Spliceosome [BR:
cten03041
]
18249322 (SUB2)
Enzymes [BR:
cten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18249322 (SUB2)
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18249322 (SUB2)
Spliceosome [BR:
cten03041
]
Complex C
Other components
EJC/TREX
18249322 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18249322 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Ned1_M
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
18249322
NCBI-ProteinID:
XP_006690096
UniProt:
G3BCZ5
LinkDB
All DBs
Position
2:complement(join(140931..142009,142298..142514))
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AA seq
431 aa
AA seq
DB search
MSAEGQEELLDYSDSEEIAVTQPTTTATDGNEKEADKKGSYVGIHATGFRDFLLKPELLR
AIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSTLV
VCHTRELAYQIRNEYARFSKYMPDVRTEVFYGGTPINKDVAKLKDKETCPHIVVATPGRL
HALVNDKALRLNNIKSFVIDECDKVLDSVDMRRDVQDIFRATPHQKQVMMFSATLSQEIR
PICKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKEKNRKLSDLLDSLEFNQVIIFVKS
TQRANELDKLLCACNFPSIAVHSGLKQEERIARYKSFKEFNKRICVSTDVFGRGIDIERI
NLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVSTPEDEEVLEKIQSRFDVKVTEFPE
EGVDPSTYMNT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgaaggtcaagaagaattattggactactccgactctgaagaaattgccgta
acccaaccaaccaccaccgccaccgatggtaacgaaaaggaagccgataaaaagggttcc
tacgttggtattcacgctactggtttcagagacttcttgttaaagccagaattattgaga
gccattggagattgtgggtttgaacacccttctgaagtccagcaagtctgtattccacaa
tccatcttgggtactgacgtgttgtgtcaagccaagtctggtttgggtaagaccgctgtt
tttgtgttgtctactttacaacaattagacccagttcctggtgaagtttccaccttggtt
gtgtgtcacacaagagaattggcctaccaaatccgtaacgagtatgccagattctccaag
tatatgccagatgtcagaaccgaagtgttctacggtggaaccccaattaacaaggatgtt
gccaagttgaaggacaaggaaacctgccctcatattgtggtggccacccccggtagatta
catgctttggttaacgataaggccttgagattaaacaacatcaagtcttttgttatcgat
gaatgtgataaagtgttagatctggtggatatgagaagagatgttcaagatatcttcaga
gccactcctcatcaaaagcaagtgatgatgttctctgccaccttgtctcaagaaattaga
ccaatctgtaagaagttcatgcaaaatccattggaaatttatgtggatgatgaggccaaa
ttgacgttgcatggtttacaacaatattacctcaaattggatgaaaaggaaaagaacaga
aagttgagtgacttgttggattcattggagtttaaccaggtgattatctttgtcaagtcg
acccaaagagccaatgagttggataagttgttgtgtgcttgtaactttccttctattgct
gtgcactctggtttgaagcaggaagagagaattgccagatataaatctttcaaggaattc
aacaagagaatctgtgtgtctactgatgtgtttggtagaggtattgatattgaaagaatc
aacttggccatcaactatgatttgccaaacgaagctgaccaatacttgcacagagttggt
agagccggtagatttggtaccaagggtttagccatctcctttgtgtccacgcctgaagac
gaagaagttttggaaaagattcaatctagattcgatgtcaaggtgaccgagttcccagaa
gaaggggtggatccttccacttatatgaacacttag
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