Yamadazyma tenuis: 18249720
Help
Entry
18249720 CDS
T03099
Symbol
SYF1, PSN45_002598
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cten
Yamadazyma tenuis
Pathway
cten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18249720 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
18249720 (SYF1)
03041 Spliceosome [BR:
cten03041
]
18249720 (SYF1)
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18249720 (SYF1)
Spliceosome [BR:
cten03041
]
Complex B
Other components
Prp19-related factors
18249720 (SYF1)
Complex C
18249720 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_C
HAT_PRP39_N
ARM_TT21
Suf
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
18249720
NCBI-ProteinID:
XP_006684943
UniProt:
G3AZW5
LinkDB
All DBs
Position
3:452884..455013
Genome browser
AA seq
709 aa
AA seq
DB search
MRKPIPVGECLSLDNLDLEVKILKDPQNKYLWLKYAEESRLFRQKVIILERAICQFTSSH
KYEDTKEFWELYITLVLKRMESLNSHDHKSQFQVVNHLFKRCLMCTSDVMMWCKYLSFLN
KQVDVPFILNEYVECLRIVPFEKHYMIWPVFLQFAETLSKYDTKLATQIMLRFINHGKYD
IHHLVKLASWNERDGTDCVMRIFKTGDYSNDDWKLVLEYIKDESFILRFLQEFPEDHSYG
YIKLVESVDSIETKKHYYNEALDTCPSVFDFTTVYESYLSFLEDSTLAEDPSDYDVDHFE
KLINERQIMINNIYLKDDFNNLDSWFNRFEIYQSQNDTNNLLKTFVKAITSINPLTVYSN
EGHRLCDIWVKYAKTYSEKGDLKTAHLIYSKSTQSKFKSVDELVNIYINWSKMYVDNGQI
EDGLKLLEDILFKKEDISKSMKLWSYYFEVLEINIDDIDRITASYYKMIELKYATPLMIF
QFAKFLQDEGRVKESYKIYEIGLKEFNDSRIRFEIYNNYLVQSIKFNEDKERIRDLFDKC
LIELPNELVKPIIVLYSEFEYDNGLIIKAFNIVNDFIMSTSLDPIDLILLLSSKYHNNVD
LRQWFEKWLTLKLTKESLMKLLKEFIKFEIANKQYDRVRTLYEYSHSNINYTFKDWEDFE
LEYGNESTFKKMLRFKTKLKETAADPVGFVMGSSTTSKPSNPDIIDIDM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaccaataccagtgggcgagtgtttgagtctagacaatctcgacctcgaggtt
aagatactaaaggatccacagaacaagtacctttggttgaagtatgcagaggagtcgagg
ttgtttcgtcaaaaagtcataatattagagagggccatctgtcagtttacatcatctcat
aaatatgaagacaccaaggagttctgggagctttatattaccttggtgttgaagagaatg
gagagcttaaactctcacgatcataaaagccaattccaagtcgtcaatcacctattcaaa
aggtgtttgatgtgcacttccgatgtgatgatgtggtgcaaatacttgtcattcttgaat
aaacaggtagacgtgccgttcatcttgaatgagtacgtcgaatgtcttcggatagtaccg
tttgaaaagcattatatgatatggcctgtgtttttgcagtttgctgaaacgctttccaag
tacgataccaaattagccactcaaattatgctaagattcatcaatcatgggaaatatgat
atacatcatttggtcaagttggcatcgtggaatgaaagagatgggacggactgtgttatg
cgtatattcaagaccggtgactactccaatgatgactggaagttggtgttggagtatatc
aaagatgaaagcttcatactacgattcctccaggaattcccagaagatcacagctacgga
tatatcaaacttgtagaaagtgttgattccatcgaaaccaagaaacattactataatgaa
gctttggacacctgtccgtctgtgtttgacttcaccaccgtctacgaatcttacttgtct
ttccttgaagattctactttggcagaagatccaagtgattacgatgtggatcactttgag
aagctcataaacgaaagacaaatcatgatcaacaacatatacttgaaggatgatttcaac
aacttagacagctggttcaacagatttgaaatctaccagagtcagaacgataccaacaat
cttcttaaaacctttgtcaaagccataacgtccattaaccccttgacagtatattcgaat
gaaggacatcgtttgtgtgatatctgggttaagtatgccaaaacctacagtgaaaaaggt
gatttgaaaactgcccatttaatttacagcaagtcaacgcaatccaagtttaagtctgtg
gatgagttggttaatatttacatcaattggtcaaaaatgtacgttgataatggacagata
gaagatggattgaaattgttggaagatatattattcaagaaagaggacatctctaagtca
atgaaattatggtcttactacttcgaggtattggaaatcaatatcgatgatatcgacaga
ataacagccagttactataagatgatcgaattaaagtacgccactccgttgatgattttc
cagtttgctaagtttctccaagatgaaggcagagtgaaggagtcctataagatatacgaa
atagggttaaaggaattcaacgattctagaatcaggtttgagatatacaataattacttg
gttcagtcaataaagttcaacgaggataaagagagaatacgggatttgtttgacaagtgc
ttgattgagcttcccaatgaattggtgaagcccattatcgtgttgtattctgaatttgag
tatgataatggccttataatcaaggcattcaacatcgtgaacgactttatcatgtcaaca
tctcttgatcctattgacttgattttgcttctaagcagcaaataccacaacaatgttgat
ttaagacagtggttcgagaagtggctaactttgaagttgaccaaagaatctttgatgaag
ctcttgaaagagtttatcaaatttgaaattgccaacaaacagtatgatagagtcagaact
ctatatgagtatagtcattcaaacattaattatacctttaaggactgggaagactttgaa
ttagaatacggaaatgaactgaccttcaaaaagatgttacggttcaagaccaaattgaaa
gaaactgctgctgatcctgttgggtttgtcatgggttcttcgactacttccaagccatcc
aatcctgacataattgacattgatatgtga
DBGET
integrated database retrieval system
