Yamadazyma tenuis: 18250246
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Entry
18250246 CDS
T03099
Symbol
lsm7, PSN45_005123
Name
(RefSeq) U6 snRNP-associated protein Lsm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cten
Yamadazyma tenuis
Pathway
cten03018
RNA degradation
cten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18250246 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
18250246 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
18250246 (lsm7)
03041 Spliceosome [BR:
cten03041
]
18250246 (lsm7)
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18250246 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
18250246 (lsm7)
Spliceosome [BR:
cten03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
18250246 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
18250246
NCBI-ProteinID:
XP_006685581
UniProt:
G3B2W1
LinkDB
All DBs
Position
7:complement(join(690992..691137,691189..691423,691514..691522))
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AA seq
129 aa
AA seq
DB search
MESKETARDGNQNNRDHKDQRRRNNGTKQEGPKREAILDLNKYKDTQIKVEFIGGRQIVG
VLKGFDQLMNLVLESVEETLRDPEDPNVLTKDTRSLGRVVVRGPSLLTISPLDGSEVIDN
PFVAAEVQA
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaaagaaactgccagagatggcaaccaaaataacagagaccacaaagatcaa
agaagaagaaataatggcaccaagcaagaaggtcccaaaagagaagccattttggacctt
aacaagtacaaagacacccagataaaggtggagtttattggaggaagacaaatagtggga
gttttgaagggatttgaccagttgatgaatttggtattggaatcggtggaggagacgtta
agagacccggaagaccccaatgtgttgacaaaggacaccagaagccttggccgggtggtg
gtcagaggcccatctttattgacgatttctcccttggatggcagtgaggttattgacaac
ccgtttgttgctgccgaagtccaggcgtag
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