Comamonas testosteroni TK102: O987_01850
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Entry
O987_01850 CDS
T03218
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctes
Comamonas testosteroni TK102
Pathway
ctes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O987_01850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctes03021
]
O987_01850
03400 DNA repair and recombination proteins [BR:
ctes03400
]
O987_01850
Enzymes [BR:
ctes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O987_01850
Transcription machinery [BR:
ctes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O987_01850
DNA repair and recombination proteins [BR:
ctes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O987_01850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIJ44561
UniProt:
A0A076PIL9
LinkDB
All DBs
Position
393846..398069
Genome browser
AA seq
1407 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMTEDDYDAKQLEYGYDEFTAK
MGAEGIKDLLEGIDIDVEIERLRNDLTGSEVKVKKNAKRLKLLEAFKKSGIKPEWMVMEV
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQE
AVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYL
KLHQCGLPKLMALELFKPFIFAQLEQRGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPI
MLNRAPTLHRLGIQAFEPILIEGKALQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEAR
VLMLASNNVLFPASGEPSIVPSQDVVLGLYHATREKINGKGEGMVFADLMELQRALDAGE
TELHAKISVRLTEWNKNKETGEFEPVTSLVETTVGRALLSEILPKGLAFSNMNKALKKKE
ISKLINASFRKCGLKATVVFADKLLQNGFRLSTHAGISISIDDMLVPPQKADILARAESE
VKEIEQQYVSGLVTSGERYNKVVDIWGKAGDDVSKVMMDQLKVQKTTDRHGNEVDQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVNEQDCGTSNGYLMRAIVEGGEVIESLRDRVL
GRSTAEEVLHPETRAVLVPAGTLLDEDTIEELEAQGVDEIKVRTALTCETRFGLCATCYG
RDLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGF
NSTMRYVSNTKGELVVISRSGEIVISENGRERERHKVPYGAVLTIKPDEAIKAGKILANW
DPLTRPIITEYAGQVRFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLI
DANNQEVKIPGTDHAVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKIRLQITDLEGKVWEELVPKERNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVIIENSGDTTYIQGEQVERSEVLNTNEQMQKEGKLPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDEMDDAERRA
IAEAEEAELAGVLADDVEAPAGDASAD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaatttacgcctgatgagcatttcgatgccatc
aagatcggcctggcctcgcccgagaagatccgttcctggtctttcggtgaagtgaagaag
cctgaaacgatcaactaccgtactttcaagcccgagcgtgatggtctgttctgcgccaag
atctttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacacagaccaaggtgcgtcgcgaa
cgcatgggtcacatcgacctggccgcgccctgcgcccatatctggttcctgaagtccctg
ccttcgcgcctgggcctggtgctggacatgacgctgcgcgacattgagcgcgtgctgtac
ttcgaagcctatgtggtgaccgaccccggcatgactccgctgaagaagttcagcatcatg
accgaggacgactacgacgccaagcaactcgagtacggctacgatgagttcaccgccaag
atgggcgctgaaggcatcaaggacctgctcgaaggcatcgacatcgacgtcgagatcgag
cgcctgcgcaacgatctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctg
aagctgctggaagcgttcaagaagtccggcatcaagcccgagtggatggtgatggaagtg
ctgcccgtgctgcctcccgatctgcgtcctctggtgcctctggacggtggccgtttcgcc
acttccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgtcgt
ctgctcgagctcaaggctcctgaaatcatcgcgcgcaatgaaaagcgcatgctgcaggaa
gcagtggactcgctgctggacaacggccgtcgcggcaaggccatgacgggcgccaacaag
cgtgccctgaagtctctggccgacatgatcaagggcaagagcggtcgtttccgtcagaac
ttgctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggtccttacctc
aagctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagcccttcatc
ttcgcgcagctcgagcagcgcggcatcgccacgaccatcaaggcggccaagaaggaagtg
gaagccggtacgcccgtggtgtgggacatccttgaagaagtcatcaaggaacaccccatc
atgctcaaccgtgcgcctacgctgcaccgtctgggtatccaggcgttcgagcccatcctg
atcgaaggcaaggccctgcaactgcacccgctggtctgcgcggccttcaacgccgacttc
gacggtgaccagatggctgttcacgtgcccctgtctgtcgaagcgcagatggaagcccgc
gtgctgatgctggcctcgaacaacgtgctgttccccgcttcgggcgaaccctccatcgtt
ccttcccaggacgtggtgctgggtctgtatcacgccacgcgtgaaaagatcaacggcaag
ggcgaaggcatggtgtttgccgacctgatggagctgcaacgcgctctggatgccggcgag
accgaactgcacgccaagatcagcgtgcgcctgaccgagtggaacaagaacaaggaaacc
ggcgaattcgagcccgtgacctcgctcgtggaaaccaccgtgggccgtgccctgctgtct
gaaatcctgcccaagggcctggctttcagcaacatgaacaaggcgctgaagaagaaggaa
atctccaagctgatcaacgcctccttccgcaagtgcggtctgaaggccacggtcgtgttt
gccgacaagctgctgcaaaacggcttccgtctgtccacgcacgctggtatctcgatctcc
atcgacgacatgctggtgcctccgcaaaaggccgacatcctggcccgcgcagagtccgaa
gtgaaggagatcgagcagcagtacgtctcgggtctggtgacctccggcgagcgctacaac
aaggtggtggacatctggggcaaggccggtgacgacgtatccaaggtgatgatggaccag
ctcaaggtccagaagaccacagaccgtcacggcaacgaagtcgatcaggaatcgttcaac
gcgatttacatgatggccgactccggcgcccgcggctccgcagcgcagattcgtcagctg
gccggtatgcgtggtctgatggccaagcctgacggctcgatcattgagacgcctatcacc
gcgaacttccgcgaaggcctcaacgtgctgcagtacttcatctcgacccacggtgctcgt
aagggtctggccgacacggcgctgaagacggctaactccggttacctgactcgtcgtctg
gtggacgtgacgcaggatctggtcgtgaacgaacaggattgcggtacctccaacggctat
ctgatgcgcgccatcgtcgaaggcggtgaagtgatcgaatccctgcgcgaccgcgtgctg
ggccgctcgaccgccgaagaagtgctgcaccccgaaacccgtgccgtgctggtgcctgcc
ggtaccttgctcgacgaagacaccatcgaagagctggaagctcagggcgtggacgaaatc
aaggtgcgtacggctctgacctgcgaaacccgtttcggcctgtgcgccacctgctacggt
cgcgacctgggtcgtggcggcctgatcaacctcggcgaagccgtgggtgtgatcgctgcc
cagtccatcggtgaacccggcacgcagctgaccatgcgtaccttccacatcggtggtgcc
gcttcgcgtgctgccatcgcttcgagcgtggaagccaagtccaatggtgtcatcggcttc
aacagcacgatgcgctatgtgtccaacaccaagggcgagctggtggtgatttcgcgttcc
ggcgagatcgtgatcagcgaaaacggccgtgagcgcgagcgtcacaaggtgccttatggc
gccgtactgaccatcaagcccgatgaagccatcaaggccggcaagatcctggcgaactgg
gacccgctgacccgacccatcattaccgaatacgccggtcaagtgcgtttcgagaatgtg
gaagaaggtctgacggtggccaagcaggtcgacgaagtgaccggtctgtccactctggtg
gtgatcgaccccaagcgtcgtggctccgccaaggtagtgcgtccccaggtcaagctgatc
gacgccaacaaccaggaagtcaagatccctggtaccgaccatgccgtgacgatcggcttc
caggtcggcgccctgattcaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatccctgtggaaggtcagaagacccgcgacattaccggcggtctgccccgtgtg
gccgaactgttcgaagcccgtacgcccaaggacaagggcactctggccgagatgaccggt
actgtgtccttcggtaaggaaaccaagggcaagatccgactgcagatcaccgatctggaa
ggcaaggtctgggaagaactggtgcccaaggagcgcaacattctggtccacgagggccag
gtggtgaacaagggcgagtccatcgttgacggtcctgccgatcctcaagacatcctgcgt
ctgctgggtatcgaagagctgtcgcgctacatcgtggacgaggtgcaggacgtttaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaagtgatcgtgcgtcagatgctgcgt
cgcgtgatcatcgagaactctggcgataccacctacatccagggtgaacaggtcgagcgt
tccgaggtgctcaacaccaacgaacagatgcagaaggaaggcaagctgcctgccacgtac
tccaacgtgctgctgggtatcaccaaggcttcgctgtcgaccgactcgttcatctctgcg
gcttccttccaggaaaccacccgtgttctgaccgaagctgccatcatgggcaagcgcgac
gaactgcgtggcctgaaggaaaacgtgatcgtgggtcgtctgatccccgccggtaccggt
ctggcctatcaccaggctcgcaaggccaaggacgaaatggacgatgccgagcgtcgtgcc
atcgccgaagccgaagaagccgagctggccggtgtgctggctgatgacgtcgaagcacct
gctggcgacgcctctgccgactaa
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