Comamonas testosteroni TK102: O987_06555
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Entry
O987_06555 CDS
T03218
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ctes
Comamonas testosteroni TK102
Pathway
ctes02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O987_06555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctes03021
]
O987_06555
Transcription machinery [BR:
ctes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O987_06555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
HC2
Motif
Other DBs
NCBI-ProteinID:
AIJ45471
UniProt:
A0A076PL98
LinkDB
All DBs
Position
complement(1435773..1438220)
Genome browser
AA seq
815 aa
AA seq
DB search
MPVSKSVKSKQAPEASAKPKTSKTSTSAAESAKKASASKPAVKKSAASAAEAKKDTTVVT
KSQAELKAMADALLAQATPKRGRKKAEEDDDTAAAPAAKKTVAKKAAPAKKAAAVKAPAA
SADADKTPAKRGRKPKAKEADEDMDDADLSDIDSDLEGEIEEETVAEASAAPAEKAKPLR
MKISKAKERALMKEFGLDETVLTEEEMNTRRQRLKMLIKLGKTRGYLTHAEINDHLPDKL
VDAETLEVVISMLNDMGVAVYEQTPDAETLLLNNTGQSATTEEEAEEEAEAALSTVDSEF
GRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMAEEI
REGKVVISTVVDGFVNANENDDYVAEEDFDEYDEEDDDDGKGGSKALTKKLEELKNEALG
RFDSMRELFDKMHKVYDKEGYGTEAYMKVQKAITEELMTIRFTAKTIEKLCDLVRAQVDD
VRKKERELRKIIVDKCGMPQEQFIKDFPPNLLNLDWVIKQVAAGKNYSAVLERNIPPVQE
LQQNLIDLQARVVVPLEELKHINKRMNSGERASRDAKKEMIEANLRLVISIAKKYTNRGL
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
INKMNRISRQHLQEFGFEPDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHL
GDFIEDGNNTAPIDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQ
FDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttcaaagtccgtgaagtccaagcaggccccagaagcttcagcaaagcccaag
acctctaaaacttccacttccgcagcagagtccgcgaaaaaggccagtgccagcaagcct
gctgtgaagaagagtgctgcatctgcagccgaagccaagaaagacaccaccgtggttacc
aagtcacaagccgaactcaaagccatggccgatgcgctgctggcgcaggcaactcccaag
cgcggccgcaagaaggccgaagaagacgacgacacagctgccgctcctgccgccaagaag
accgtcgccaagaaggctgctcccgccaagaaggctgcagccgtcaaggcccccgctgcc
agcgccgatgccgacaagactcccgccaagcgcggtcgcaagcccaaggccaaggaagcc
gacgaggacatggatgatgccgacctgtcggatatcgacagcgatctggaaggcgaaatc
gaagaggagacagtcgctgaagcgtctgctgctcctgccgaaaaggccaagcctctgcgc
atgaaaatcagcaaggcgaaggaacgcgccttgatgaaggaattcggcttggacgagacc
gttctgaccgaagaggaaatgaacacccgccgtcagcgtctgaagatgctgatcaagctg
ggcaagacccgcggctacctgacccacgccgaaatcaacgaccacctgcccgacaagctg
gtcgatgccgaaacgctggaagtcgtgatctccatgttgaacgacatgggcgtagccgtg
tacgagcagactcccgatgcggaaaccctgctgctgaacaacaccggccagtcagccacc
accgaagaggaagcggaagaagaagccgaagcggcgctgtctaccgtggactccgaattc
ggccgcaccaccgaccccgtgcgcatgtacatgcgtgaaatgggtaccgtcgaactgctg
acacgcgaaggcgaaatcgaaatcgccaagcgcatcgaaggcggcctgatggacatgatg
gaagccatctcggcttcccccgcgaccatcgccgagatcctcaatatggccgaggagatc
cgcgaaggcaaggttgtcatctccaccgtggtggacggcttcgtcaatgccaacgagaac
gacgactatgtggccgaagaagacttcgacgaatacgacgaagaagatgacgatgacggc
aagggtggctccaaggccctgaccaagaagctcgaagagctgaagaacgaagccctgggt
cgctttgactccatgcgcgagcttttcgacaagatgcacaaggtgtatgacaaggagggc
tacggcaccgaggcatacatgaaggtgcagaaggccatcaccgaagagctgatgaccatt
cgcttcacggccaagacgattgaaaagctctgcgatctggtacgcgcccaggtggacgac
gtgcgcaagaaggaacgcgagctgcgcaagatcatcgtggacaagtgcggcatgccgcag
gagcagttcatcaaggacttcccgcccaacctgctgaacctggactgggtcatcaagcaa
gtggcggcaggcaagaactacagcgccgtgctggagcgcaacatcccgcccgtgcaggag
ctgcagcagaacctgatcgacctgcaggcccgcgtggttgtgcctctggaagagctcaag
cacatcaacaagcgcatgaacagcggcgagcgcgccagccgtgacgccaagaaggaaatg
atcgaggccaatctgcgtctcgtgatctccatcgccaagaagtacaccaaccgaggtctg
cagttcctggatctgatccaggaaggcaatatcggcctgatgaaggccgtggacaagttc
gaataccgtcgcggctacaagttctcgacctatgcgacctggtggattcgtcaggccatc
acgcgctccatcgccgaccaggcccgcacgatccgcatccccgtgcacatgatcgagacc
atcaacaagatgaaccgcatctcgcgccagcacttgcaagagtttggtttcgagcccgat
gcgtccatcctggcagccaagatggagatccccgaggacaagatccgtaagatcatgaag
atcgccaaggagccgatctcgatggaaacccccatcggcgacgacgacgactcccacctg
ggcgatttcatcgaggacggcaacaacacggcgcccatcgatgccgccatgcaggccggt
ctgcgcgatgtggtaaaggacatccttgacggcctgacgcctcgcgaagccaaggtgctg
cgcatgcgcttcggtatcgaaatgtccaccgatcacacgctggaagaagtcggcaagcag
tttgacgtgacgcgcgagcgtatccgtcagatcgaagccaaggcgctgcgcaagctcaag
cacccttcgcgctccgacaagctgcgcagcttcatcgactcgctgtaa
DBGET
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