KEGG   Comamonas testosteroni TK102: O987_11880
Entry
O987_11880        CDS       T03218                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ctes  Comamonas testosteroni TK102
Pathway
ctes02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ctes00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    O987_11880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctes03021]
    O987_11880
Transcription machinery [BR:ctes03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     O987_11880
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 PhyR_sigma-like Sigma70_r4 DUF6197 HTH_23 HTH_7
Other DBs
NCBI-ProteinID: AIJ46494
LinkDB
Position
2537568..2538074
AA seq 168 aa
MSAVESVIHREVTALYIDHHGWLQGWLRKKVGNAFDAADLAQDTFVRILGVREPQEIESP
RAYLTTVAKGVLVNWCRRQALERAYLDALALLPEPEVPSPEHRALVLEALHEIDAMLDAL
PPLVRRTFLLSQLEDMRYDAIALQLGVSLSSVKRYMAQAFRHCLALMD
NT seq 507 nt   +upstreamnt  +downstreamnt
atgtccgctgtcgaatccgtcatccaccgcgaagtcactgcgctttacatcgaccatcac
ggctggttgcagggctggttgcgcaaaaaggtcggcaatgccttcgatgcggccgatctg
gcgcaggacaccttcgtgcgcatccttggtgtgcgcgagccgcaggagatagagtcgccg
cgtgcctatctgaccacggtggccaagggcgtgctggtcaactggtgccggcgccaggcg
ctggagcgcgcctatctggatgcgctggccctgctgcccgagcccgaagtgccttcgccc
gagcaccgggccctggtgctggaggccttgcatgagatagatgccatgctcgatgccttg
ccgcccctggtgcgccgcaccttcctgctgtcgcagctggaagacatgaggtacgacgcc
attgcgctgcaactgggcgtgtcgctgagcagcgtcaagcgatacatggcccaggctttc
aggcattgcctggcgctgatggattga

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