KEGG   Comamonas testosteroni TK102: O987_12055
Entry
O987_12055        CDS       T03218                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ctes  Comamonas testosteroni TK102
Pathway
ctes02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ctes00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    O987_12055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctes03021]
    O987_12055
Transcription machinery [BR:ctes03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     O987_12055
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 GerE HTH_40 PhyR_sigma-like Xre-like-HTH MarR HsdM_C HTH_28 HTH_11 TnsD HTH_38 HTH_36
Other DBs
NCBI-ProteinID: AIJ46527
LinkDB
Position
complement(2577241..2577816)
AA seq 191 aa
MGIICVESADFQSREIPVSSPANSIASDALGSIYTLHNRWLTAWLQRKLGNRHDAADIAQ
DTFTRIWATAKSQAIEDIREPKAYLTTVARRLMINHLERRSLEQAYLASLHLLPEETALS
AEARAILLETLEELDQLLGELPAKVRTTFLLSQLEGLSYEEIASHMQLSVRTVTRYMAQG
FRQCLRVMLDS
NT seq 576 nt   +upstreamnt  +downstreamnt
atgggtatcatttgtgtagaatcagcggatttccaatcccgagagattcctgtgtcatcc
cctgccaacagcatcgccagtgacgcacttggcagcatttacacactgcacaaccgctgg
ctgaccgcctggctgcagcgcaagctgggcaatcgtcacgatgcagcagacatcgctcag
gacacattcacgcgcatctgggcgactgcaaaatcgcaagccatcgaggacatccgcgag
cccaaagcctatctgaccacagtcgccaggcgcttgatgatcaatcacctggaacgcagg
tcgcttgagcaggcctatctggcatccctgcatctgctgcccgaagaaacagcactgtct
gccgaggctcgcgccatcctgctggagactctggaggagctggatcagttgctcggcgag
ctgccggccaaagttcgcaccacatttctgctttcccagctggaagggctctcttacgaa
gagattgcatcgcatatgcaattgagtgtgcgcacggtcacccgctatatggcgcagggc
ttccggcaatgcctgcgtgtaatgctggatagctga

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