Comamonas testosteroni TK102: O987_17695
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Entry
O987_17695 CDS
T03218
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ctes
Comamonas testosteroni TK102
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ctes03016
]
O987_17695
Enzymes [BR:
ctes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
O987_17695
Transfer RNA biogenesis [BR:
ctes03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
O987_17695
Prokaryotic type
tRNA splicing ligases
O987_17695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIJ47650
UniProt:
A0A076PV24
LinkDB
All DBs
Position
3763631..3764857
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AA seq
408 aa
AA seq
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MSEQNYQLLEVAGGVPVKMWTKGVPVEAEARQQLANAARLPIVFKHIAAMPDVHLGIGAT
IGSVIPTVKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDSLATLRSAIEKAVPHGSAPKSR
GRDPGAWENPPDLVDQKWATLADEFDALCELHPRLEKTNNRKHLGTLGSGNHFVEVCLDE
VGFVWFMLHSGSRGVGNAIGNHFIELARKDAELHQRNLPDRDLAYLEEGARYFGDYVRAV
SWAQKFAISNREVMMANLIATVRQVIAKPFESHVEAVNCHHNYVQKEHHFGEDVFVTRKG
AVSARRGEMGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKLYSVADQIKA
TEGVECRKDEGVIDEIPMAYKDIDAVMAAQKDLVEVVHTLKQVICVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagaattaccaactgctggaagtcgctggcggcgtgcccgtcaagatgtgg
accaagggcgtgcccgtggaagccgaggcccggcaacaactggccaacgccgctcgcctg
cccattgtcttcaaacatattgccgccatgcccgatgtgcatctgggcattggtgccacc
atcggctcggtgattcccaccgtcaaggccatcatccccgcagccgtcggcgtggatatc
ggctgcggcatgatggccgccaagaccacactgcgcgccgaagacctgcccgacagcctg
gccacgctgcgctcggccattgaaaaagccgtgccccatggctcggcacccaaaagccgt
ggccgcgaccctggtgcctgggagaaccctcccgatctggtggaccagaaatgggccacg
ctggccgacgagttcgacgcgctgtgcgagctgcacccgcgcctggaaaagaccaataac
cgcaagcacctgggaactctgggtagcggcaatcactttgtggaagtgtgcctggacgag
gtgggctttgtctggttcatgctgcactcgggctcgcgtggcgtgggcaatgccatcggc
aaccatttcatcgagctggccagaaaagacgccgagctgcatcagcgcaatctgcccgac
cgggacctggcctaccttgaagaaggagcccgctactttggcgactatgtgcgcgcagtt
tcgtgggcgcagaagttcgccataagcaaccgcgaggtgatgatggccaacctgatcgcc
accgtgcgccaggtgattgccaagcctttcgagtcccatgtggaggccgtgaactgccac
cacaactatgtgcaaaaggaacaccactttggcgaggatgtgttcgtcacccgcaagggt
gccgtgagcgccaggcgcggcgagatgggcatcatccccggcagcatgggcgcgcgcagc
tatatcgtgcgcggcctgggcaaccccgagagctttgaaagctgcagccacggcgcgggc
cgcgtaatgagccgcaccaaggccaagaagctgtactcggtggctgaccagatcaaggcc
accgaaggcgtggaatgccgcaaggacgagggcgtgatcgacgagatccccatggcctac
aaggacatcgacgccgtcatggccgcccagaaagacctggtggaagtggtccataccctc
aagcaggtgatctgcgtcaagggttag
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