Comamonas testosteroni TK102: O987_21430
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Entry
O987_21430 CDS
T03218
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ctes
Comamonas testosteroni TK102
Pathway
ctes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O987_21430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctes03019
]
O987_21430
Enzymes [BR:
ctes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O987_21430
Messenger RNA biogenesis [BR:
ctes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O987_21430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIJ48375
UniProt:
A0A076PX39
LinkDB
All DBs
Position
complement(4567729..4569150)
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AA seq
473 aa
AA seq
DB search
MTSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKSRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVSDDDKRYAI
RSVLKERDIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEV
DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRN
VADIEKLIKKKIDVEPAPMLDLRPPRRSRGDEEYRPRREREFDAAPRGGYAHRPSRMAPR
PANADPFFERPYEASSAGETASWDSTHVAPVKSASIKPKRKVAALFRAPVVAS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacaagctctttctccaatcttcacttggctgagcccctggcacgcgcagtggccgac
atgggctatgagtccatgactccgattcaggcgcaggccattccggtggtattgaccggc
aaggacgtcatgggcgcagcccagaccggcactggcaagacggcggctttctccctgccc
ctgctgcagcgcctgatgcgccatgaaaacgcttcagcatcgcctgcccgccatccggtg
cgtgccctggtgctgctgcccacgcgtgaactggccgatcaggtggcacaacagattgcc
ctgtacgccaagcacaccaagctgcgcagcaccgtggtcttcggtggcatggacatgaaa
ccccagaccctcgagctgaaaaaaggcgtcgaggtgctggtggccacgccaggtcgtctg
ctggaccacatcgaagccaagaatgtggtgctcaaccaggtggaatatgtagtgctggac
gaggccgaccgcatgctggatatcggctttctgccggatctgcagcgcatcctctcctat
ctgcccaaaagccgcaccacgctgctgttctcggccacgttctcgccggagatcaagcgg
ctggccggcagctatctgcaggatccggtgaccatcgaggtggcccgacccaatgagacg
gcctccaccgtggagcagcgcttctacaaggtctcggatgacgacaagcgttacgcgatt
cgttccgtgctcaaggagcgcgacattcgccaggccttcatcttctccaatagcaagctg
ggctgtgcgcgcctgacgcgtgccctggagcgtgacggtctgcgcgccggcgcactgcat
ggagacaagagccaggacgaacgcctgaaggcactggaagccttcaaggccggcgaggtg
gatctgctggtctgtaccgatgtggccgcgcgcggtctggacatcaaggatgtgcccgcc
gtgttcaactacgacgtgcctttcaacgccgaagactatgtgcaccgcatcggccgtacc
ggtcgcgccggcgcatcgggtctggccgtgacgctggtgaccgaccatgacagccgcaat
gtggccgacatcgaaaagctgatcaagaagaagatcgacgtcgaacccgcgcccatgctg
gacttgcgccccccacggcgcagccgcggcgatgaggaatatcgcccacgtcgcgaacgc
gagttcgatgcagcgccccgtggcggctatgcacaccgtccttcgcgcatggccccgcgt
cctgccaatgcggacccattcttcgagaggccctatgaggccagcagcgccggcgagact
gcatcctgggacagcacgcatgttgccccggtcaagagcgcgagcatcaagcccaagcgc
aaggtcgcagccttgttcagagcgcctgtcgtggcttcctga
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