Comamonas testosteroni TK102: O987_28320
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Entry
O987_28320 CDS
T03218
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ctes
Comamonas testosteroni TK102
Pathway
ctes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O987_28320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctes03400
]
O987_28320
DNA repair and recombination proteins [BR:
ctes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O987_28320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
O987_28320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_23
AAA_29
nSTAND1
RsgA_GTPase
AAA_22
DnaJ_CXXCXGXG
AAA_21
nSTAND3
AAA_25
cobW
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
AIJ49709
UniProt:
A0A076PS99
LinkDB
All DBs
Position
6018217..6021285
Genome browser
AA seq
1022 aa
AA seq
DB search
MSLKPDSPSEVHDDSLYLGRSLAQTRIAIRGARTHNLKNIDLDIPRNQLVVITGLSGSGK
SSLAFDTLYAEGQRRYVESLSAYARQFLGRLDKPDVDLIEGLSPAISIEQKATSHNPRST
VGTVTEINDYLRLLYARAGTPFCPDHNLPLQAQTISQMVDSVLQLPEDTRLMILGPLARE
KKGEFAELFVQLQAQGYVRFRVDGQIYDAQSLPKLEKNERHNIDVVIDRVKVREDIKQRL
AESFEAALRAGGADAGGRVIALEMDGGKEHLFSAKFACPLCDYSLPELEPRLFSFNSPMG
ACQACDGLGNSEAFDPDRVVPFPSLSLASGAIKGWDKRNSYYFSMLESVAKHYGVSTETA
FEELPEKVRNVILFGSGDESMEFNYVFESGERKGEAFIKSHPFEGIIPNIQRRFRETESQ
VVRDDLAKLRSVRKCPECEGTRLRREARFVRVGDGEQARSIYEVSHATLADALGWFKQLS
MAGAKAEIADKIVREIASRLLFLNDVGLSYLSLDRSADTLSGGEAQRIRLASQIGSGLTG
VMYVLDEPSIGLHQRDNDKLIATLEHLRDIGNSVIVVEHDEDMMRAADQIIDMGPGAGVH
GGRIMAQGSYEDIKACPDSPTGRYLSGVQSIPVPRLRTAWLPVLRKDSEAEASQSASRFP
VTAAKKRESASKVRTDLQALTVEGARGHNLRNVTVDFPVGLFTCVTGVSGSGKSTLVNDT
LYAEAARQIHRAGTEPAAHDDIAGIDYFDKVINVDQSPIGRTPRSNPATYTGLFTPIREL
MAETNTAKERGYGPGRFSFNVSGGRCEACQGDGVVKVEMHFLPDVYVPCDLCHGQRYNRE
TLEVQWKGRNISQILEMTVEDAHAFFKDVPSIARKLQTLLDVGLSYIRLGQSATTLSGGE
AQRVKLAQELSKRDTGRTLYILDEPTTGLHFADIALLLKVLHQLRDAGNTIVVIEHNLDV
IKTADWLIDMGPEGGSGGGQVVAQGTPEDIAANPASVTGRYLKPYLDKAPAKSKAKSSSK
QD
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctgaagcctgattcgccctctgaagtccatgatgacagcctctatctgggccgc
tctctggctcagacacgcatcgccattcgcggcgcacgcacgcacaatctcaagaacatc
gacctggacattccccgcaaccagctggtggtaatcaccggcctgtcgggctcgggcaag
tccagtctggccttcgacaccttgtacgccgaaggccagcgtcgctatgtggagagcctc
tcggcctatgcacgccagtttctgggccgcctggacaagcccgatgtcgatctgatcgag
ggcctgtcaccggccatttccatcgagcagaaggccaccagccacaacccgcgctccacc
gtgggcacggtgaccgagatcaacgactacctgcgcctgctctacgcccgtgccggcacc
cccttctgccccgaccacaatctgccgctgcaggcccagaccatcagccagatggtggac
agcgtgctgcagctgcccgaagacaccaggctgatgatcctcggccctctggcacgcgag
aaaaagggcgagttcgccgagcttttcgtgcagctccaggcccagggctatgtgcgcttt
cgcgtcgacgggcagatctacgacgcccagtccctgcccaagctggagaagaacgaacgc
cacaacatcgatgtggtgatagaccgcgtcaaggtgcgcgaagacatcaagcagcgcctg
gccgaaagcttcgaggccgccttgcgcgccggcggtgccgatgccggcggccgtgtcatc
gcgctggagatggacggtggcaaggaacatctgttcagcgccaagttcgcctgccccctc
tgcgactactccctgcccgagctggagccgcgcctgttctccttcaactcgcccatgggt
gcctgccaggcctgcgatggcctgggcaacagcgaagccttcgaccccgaccgcgtcgtg
cccttcccgtcgctgagtctggccagcggtgccatcaagggctgggacaagcgcaacagc
tactacttctccatgctggagagcgtggccaaacactatggcgtgagcaccgagacggcg
ttcgaggaactgcctgagaaggtgcgcaacgtgattctctttggctcgggcgacgagtcc
atggagttcaactatgttttcgagagcggcgaacgcaagggcgaagccttcatcaagtcg
catccgttcgaaggcatcatccccaatattcagcgccgctttcgcgagaccgaatcccag
gtcgtgcgcgacgatctggccaagctgcgcagcgttcgcaaatgccccgagtgtgaaggc
acgcgcctgcgccgcgaagcgcgctttgtgcgcgtgggcgatggcgagcaggcccgctcc
atctatgaagtcagccatgccacgctggccgatgcactgggctggttcaagcagctgagc
atggccggagccaaggccgagattgcggacaagatcgtgcgcgagatcgcctcgcgcctg
ctcttcctcaacgatgtgggtctctcgtacctgagcctggaccgcagcgccgacacgctc
tcgggtggcgaagcccagcgcattcgcctggcgtcccagatcggctccggcctgacgggc
gtgatgtatgtgctggacgaaccctccatcggcctgcaccagcgcgacaacgacaagctg
attgcgacactcgagcacctgcgtgatatcggcaacagcgtgatcgtggtcgaacatgac
gaagacatgatgcgtgctgccgaccagatcatcgacatgggtccgggcgccggcgtgcat
ggcggccgcatcatggcccagggcagctatgaggacatcaaggcctgccccgattcgccc
actggccgctatctgagcggcgtacaaagcattcccgtgccgaggctgcgcactgcctgg
ctgcctgtgctgcgcaaggacagtgaagccgaagccagccaaagcgcatcgcgctttccg
gtcacggccgcgaaaaagcgggagtccgcgagcaaggtgcgcaccgacctgcaggcactg
actgtggaaggcgcgcgcggtcacaacctcaggaacgtgaccgtggacttccccgtcggc
ctgttcacctgcgtgaccggcgtctcgggctcgggcaaatccaccctggtcaacgatacg
ctgtatgccgaagcagcgcgccagatacaccgtgcaggcaccgagccggctgcgcatgac
gacatcgcaggcatcgactatttcgacaaggtcatcaacgtcgaccagtcgcccatcggc
cgcacgccgcgcagcaacccggcaacctataccggcctgttcacgccgatccgcgagctg
atggccgaaaccaataccgccaaggagcgcggctacggccccgggcgcttctcgttcaat
gtctcgggcggccgctgcgaagcctgccagggcgatggcgtggtcaaggtggaaatgcac
tttctgcccgatgtctacgtgccctgcgacctctgccacggccagcgctacaaccgcgag
acgctggaggtgcagtggaagggccggaacatctcgcagattctggagatgacggtcgaa
gacgcacatgccttcttcaaggatgtgcccagcattgcgcgcaagctgcagaccctgctg
gacgtgggcctgtcctatatccggctgggccagagcgcgaccacgctgtcgggcggcgag
gcccagcgcgtcaagctcgcgcaggagctgtccaagcgcgacaccggccgcacgctttac
atactcgacgagcccaccaccggcctgcacttcgccgatattgccctgctcctgaaagtg
ctgcaccagctgcgcgatgcgggcaacaccatcgtcgtgatcgagcacaacctcgacgtc
atcaagaccgccgactggctgatcgacatgggccccgagggcggctcgggcggcggccag
gtcgtggcccagggcacgcccgaagacatcgcagccaacccggccagcgtgacgggccgc
tacctcaagccctatctggacaaggcccctgccaagtccaaagccaaatcgtcctcaaaa
caagactga
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