KEGG   Comamonas terrigena: CT3_00700
Entry
CT3_00700         CDS       T09012                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ctez  Comamonas terrigena
Pathway
ctez02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ctez00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CT3_00700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctez03021]
    CT3_00700
Transcription machinery [BR:ctez03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CT3_00700
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 PhyR_sigma-like HTH_11 Sigma70_ECF HTH_23 HTH_24 HTH_40 HTH_IclR HTH_Crp_2 HTH_20 HTH_36 HTH_5 HTH_Tnp_ISL3 HVO_A0261_N HTH_29 HTH_DeoR GerE PF0610-like_N GntR MarR_2 HTH_ParB HTH_AsnC-type HTH_10 Xre-like-HTH HTH_28 HTH_17 HTH_3 MarR HTH_64 HTH_8 HTH_26 DUF6362 TnsD Crp HTH_7 HTH_31 HTH_38 HTH_50 DUF134 TrmB
Other DBs
NCBI-ProteinID: BBL22615
LinkDB
Position
complement(90782..91297)
AA seq 171 aa
MSASLSAAAHTLQTFYLQHHGWLVARLRRKIGCPWDAADLAQSTFLRAWTAPGPPLDQVA
EPRAYLTTIAQRLLSNHLRRRQIERAYLEALGALPDPVAPPPDVQLMVLETLVAIDQLLD
GLPAVARQAFLLWRLEELTQEEIAQQLGLSRTTVRRHLATAAERCYFGMGE
NT seq 516 nt   +upstreamnt  +downstreamnt
atgtccgcttccctcagcgctgcagcccataccctgcagacgttctacctgcagcaccat
ggctggctggtggcgcggctgcgccgcaagatcggctgcccctgggacgcggcggatctg
gcgcaaagcacgtttttgcgcgcctggacggcgcccggtccgccactggaccaggtggcg
gagccccgcgcctatctgaccaccattgcccagcgcctgctgtccaaccacctgcgccgg
cgccagatcgaacgcgcctacctggaggcgctcggcgccctgcccgaccccgtcgcaccg
ccccccgatgtgcagctgatggtgctggaaaccctggtcgccatcgaccagttgctggac
ggcctgcccgccgtggcccgccaggcctttttgctgtggcggctggaagagctgacccag
gaagaaattgcccagcagctcggtctctcccgcaccacggtacgccgccacctggccaca
gccgccgagcgctgctacttcggcatgggggagtga

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