Comamonas terrigena: CT3_15200
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Entry
CT3_15200 CDS
T09012
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ctez
Comamonas terrigena
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctez03009
]
CT3_15200 (rlmD)
Enzymes [BR:
ctez01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CT3_15200 (rlmD)
Ribosome biogenesis [BR:
ctez03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CT3_15200 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
PCMT
RrnaAD
MTS
Motif
Other DBs
NCBI-ProteinID:
BBL24065
LinkDB
All DBs
Position
1694027..1695529
Genome browser
AA seq
500 aa
AA seq
DB search
MSDQNDKISPDTEYAAMPAADPNLPEGWLEVVSMDMEAKGVARKPDGKVVFIDGALPTEL
VTANVHRKKNNWEAASLREIHRESAQRVKPGCPNAGLHEGACGGCKMQHMHVAAQVAVKQ
RVLEDNLWHLGKVKPETLLRPIEGPTWGYRYRARLSVRYVIKKGKVLVGFHERKSRYIAD
METCKVLPPHVDAMLMPMRALIASLDARETCPQIEVACGDDVTALVLRHLEPLSDADLQR
LRDFGTQYDVQWWLQPKGPDTVHLMEQGGTQLAYSLPDFGITMPFKPTDFTQVNPHINRV
LVTRSLRLLAAQKTDRVIDWFCGLGNFTLPLATMAGEVLGIEGSDALVQRSHENLAANNA
ARADGDKLAPTTFVARNLFNMTPAILMADGNADKWLVDPPREGAFALAKALADIHQIRIG
AKQTGVATEEQPDLLPPLPEGHENWTFPERIVYVSCSPATLARDAGLLVHQAGYRCVTAG
VVNMFPHTAHVESMAVFERA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccagaacgacaagatttcccccgataccgagtacgccgccatgcccgccgcc
gaccccaacctgcccgagggctggctggaggtggtgtccatggacatggaggccaagggt
gtggcccgcaagcccgacggcaaggtggtgttcattgacggcgccctgccgaccgagctg
gtcacggccaatgtgcaccgcaagaagaacaactgggaagccgccagcctgcgcgagatc
caccgcgaatccgcgcagcgggtgaagcccggctgccccaacgccggcctgcacgaaggt
gcctgcggcggctgcaagatgcagcacatgcatgtcgcagcccaggtggccgtcaagcag
cgcgtgctggaagacaatctgtggcacctgggcaaggtgaagcctgaaaccctgttgcgc
cccatcgaaggcccgacctggggctaccgctaccgcgcccgcctgtcggtgcgctatgtg
atcaagaagggcaaggtgctggtgggcttccatgagcgcaagagccgctatattgccgac
atggaaacctgcaaggtgctgccgccccatgtggatgccatgctgatgcccatgcgggca
ctgattgccagcctggatgcgcgcgagacctgcccgcagatcgaagtagcctgcggcgac
gacgtgacggccctggtgctgcgccacctggagcccttgagcgacgccgacctgcagcgt
ttgcgtgacttcggcacgcagtacgacgtgcagtggtggctgcagcccaaggggccggac
accgtgcacctgatggagcagggcggtacccagctggcgtattccctgccggacttcggc
atcaccatgccgttcaagccaaccgacttcacccaggtgaatccgcacatcaaccgcgtg
ctggtgacgcgttcgctgcgcctgctggcggcgcagaagaccgatcgcgtgattgactgg
ttctgcggtctgggcaacttcacattgccgctggcgacgatggcgggcgaggtgctgggc
attgaaggctcggacgcgctggtgcagcgctcgcacgaaaacctggcggccaacaatgcg
gcccgcgccgacggcgacaagctggcgcccaccacgttcgtggcccgcaacctgttcaat
atgacgcccgccatcctgatggccgacggcaatgccgacaaatggctggtggatcctccc
cgcgaaggtgcgtttgcgctggccaaggcgctggccgacatccaccagatccgcattgga
gccaagcagaccggtgtggccaccgaggagcagcccgatctgctgccgccgctgcccgaa
ggccatgagaactggacgttccccgagcgcatcgtgtatgtgagctgcagccccgccacg
ctggcgcgcgatgccggcctgctggtgcatcaggcgggttaccgctgcgtgacggcgggc
gtggtgaacatgttcccgcacacggcccacgtggaatcgatggcggtgttcgagcgcgct
tga
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