Comamonas terrigena: CT3_23810
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Entry
CT3_23810 CDS
T09012
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ctez
Comamonas terrigena
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctez03019
]
CT3_23810
Enzymes [BR:
ctez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CT3_23810
Messenger RNA biogenesis [BR:
ctez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CT3_23810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
nSTAND3
AAA_19
NACHT
T2SSE
AAA_23
AAA_25
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
BBL24926
LinkDB
All DBs
Position
complement(2695190..2699248)
Genome browser
AA seq
1352 aa
AA seq
DB search
MSLKITFPEQLPVSSRRDEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKINAVP
DDKGVVRGHLIGHTQPRRIAASSVAKRIAEELNTPLGEVVGYKVRFQDTLQKNASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLRQILPQRPDLKVVVTSATIDA
DRFAKHFEGKDGPAPVIMVSGRTYPVEMRYRPFEGEKDKDLNDAIAEGVDELWAGGKGGD
ILIFLPGEREIREAADHVRKHLQHSPTLRSAEVLPLFSRLSQAEQDRIFDGHTGRRIVLA
TNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGI
CIRLYDEVDFNGRDKFTDPEILRSSLAGVILRMKALGLGDVVHFPFLEAPSGRAIADGYQ
LLAELGAVDERGNLLAMGKELSRLPLDPRVGRMILEARARGALSEVLVIASALSVQDVRD
RPMEAQQQADQAHAKFDDEKSEFTGYLRLWKWLQDARGGKVVAKSRAEMAAQHQPAAKPS
ARSQAFLPVSQRGSGAQVEGTVEERLALFNPAEPAQEATHKISNRQWEQLLRQNFVNIRR
VREWRDIHSQLLTVVKEQKWLLNNEAAGYEAVHLSMLSGLLGNIGYKGEENESYLGAHGI
KFHPHPGAHLSKKPGRWIVAAEQVETSRLYGRGIAAIEPQWLEEVGGHLLRKQLLDPHWS
KKQADVVALERATLYGLVVYNGRRVSYGRIDPHEARNLFIRQALVAGEWETKWHFLPANL
KLMRKVEELEHKSRRQDVLVDDELIFAFYDQQLPRDVYSGATFDHWFRLQSKGNPELLRL
SKDELMRHEAAGITTDNFPKLVKLGGVDCAAAYLHSPGDARDGVTVTVPLFVLNQVSEER
AEWLVPGMLKDKIQALLKSLPQRPRSRFVPLPENAARLAALFTSVERWAQGGLIDVLLKQ
VRDETSLDVKRADFKLDMLSPHLFMNFRITDEHGRQLGQGRNLGALKAEWGVKARGAFQA
LASLKVAAVVQGQSESAQKAPHPAQAGAPAAAKAGGAACKPDKSVPAQAHDTRYKEWGFG
ELPELMEIKKGGTTLIGFPALIDHGDAVGIEVFDEPEVAAAKHRVGLRRLFALQIRDALK
YLEKNIPDLQKMAVAYMPLGTQEELRGQIIDVAIDRAFLQDPLPANEADFKQRVQDGRGR
LTLIANEVARMSATILTEYAAAARKIKDTKNAPEATKDAGEQLHKLVPKNFIAVAPWSQL
GHYARYLKAITTRLDKYRADPARDAAKLKELQPMEQRYWRLVAERKGQVDARMQEYRWML
EELRVSFFAQELRTPYPVSTKRLDKVWQQLQH
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgaagatcaccttccccgagcaactccccgtatccagccgccgtgacgagatc
atggaggccatggaccgccaccaggtcatcatcgtctgtggcgagacgggctcgggcaag
accacgcagctgcccaagatcgcgctggcgctgggccgcggcaagatcaatgcggtgccg
gacgacaagggcgtggtgcgcggccacctgatcggccacacccagccgcgccggattgcg
gccagctcggtcgccaagcgcattgccgaggagctgaacacgccgctgggcgaggtggtg
ggctacaaggtgcgtttccaggacacgctgcagaagaacgcctcggtcaagctgatgacg
gacggcatcctgctggccgaaacccagaccgatccgctgctcaaggcctatgacacgctg
atcatcgacgaggcgcacgagcgcagcctgaacatcgactttctgctgggctatctgcgg
cagatcctgccccagcgccccgacctgaaggtggtggtgacctcggccaccatcgatgcc
gaccgctttgccaagcactttgaaggcaaggacgggcctgcgccggtgatcatggtctcg
ggccggacctacccggtggagatgcgctatcgcccgttcgagggtgagaaggacaaggac
ctgaacgacgccattgccgagggcgttgacgagctgtgggccggcggcaaggggggcgac
atcctgatcttcctgcccggcgagcgcgaaatccgcgaagcggcagaccatgtgcgcaag
cacctgcagcattcgcccaccttgcgcagcgccgaagtgctgccgctgttctcgcgcctg
tcgcaggccgagcaggaccggatcttcgacggccacaccggccggcgcatcgtgctggcc
acgaacgtggcggaaacctcgctgacggtgccgggcatacgctatgtcattgacgccggt
acggcgcgcgtgaagcgctattccttccgcagcaaggtggagcagctgctggtagagccg
atttcgcaggccgccgccaaccagcgcgccggccgctgcggccgggtggccaacggtatc
tgcatccgcctgtatgacgaggtggatttcaacggccgcgacaaattcaccgacccggaa
atcctgcgcagctcgctggccggggtgattctgcgcatgaaggcgctgggcctgggcgat
gtggtgcatttcccgttcctggaagcgccttcgggccgcgccattgccgatggctaccag
ctgctggccgaactgggcgcggtggacgagcgcggcaatctgctggccatgggcaaggag
ctgtcgcgcctgccgctggacccgcgcgtgggccgcatgattctggaggcgcgtgcgcgt
ggtgcgctgtcggaggtgctggtgattgcctcggcgctgtcggtgcaggatgtgcgcgac
cggcccatggaggcccagcagcaggccgaccaggcgcatgccaagttcgacgacgaaaaa
agcgaattcaccggctacctgcggctgtggaaatggctgcaggacgcgcgtggcggcaag
gtggtggccaagagccgcgccgagatggcggcgcagcaccagcccgcggccaagcccagc
gcccgcagccaggcctttttgccggtgagccagcgcggcagcggcgcccaggtggaaggc
acggtggaggagcggctggcgctgttcaaccctgccgagccggcgcaggaggccacgcac
aagatcagcaaccgccagtgggagcagttgctgcgccagaacttcgtcaacatccgccgc
gtgcgcgagtggcgcgacatccattcgcagctgctcaccgtggtcaaggagcagaaatgg
ctgctcaacaacgaggctgccggctatgaggccgtgcatctgtcgatgctgtccggcctg
ctgggcaacatcggctacaagggtgaggaaaacgaaagctacctgggtgcgcacggcatc
aagttccacccccaccccggcgcccacctgtccaagaagccgggccgctggatcgtggcg
gccgagcaggtggagacctcgcgcctgtacggccggggcattgccgcgatcgagccgcag
tggctggaggaagtgggcgggcacctgctgcgcaagcagctgctggacccgcactggagc
aagaagcaggcggatgtggtggcactggagcgcgccacgctctacggcctggtggtctac
aacggccggcgcgtgagctacggccgcatcgatccgcacgaggcgcgcaatctgttcatc
cgccaggcgctggtggccggggagtgggaaaccaaatggcatttcctgcccgccaacctg
aagctgatgcgcaaggtggaggagctggagcacaagagccgccgccaggacgtgctggtg
gacgacgagctgatctttgccttctacgaccagcagctgccgcgcgatgtgtacagcggc
gccacgttcgaccactggttccgcctgcagagcaagggcaaccccgagctgctgcgcctg
tccaaggacgagctgatgcgccacgaggcggccggcatcaccaccgacaacttccccaag
ctggtcaagctcggcggggtggactgcgcggcggcctatctgcacagcccgggcgatgca
cgcgacggcgtgacggtgaccgtgccgctgttcgtgctgaaccaggtgtcggaagagcgg
gccgaatggctggtgcccggcatgctgaaagacaagatccaggccctgctcaagagcctg
ccgcagcgcccgcgcagccgctttgtgccgctgcccgaaaacgcggcgcggctggccgcg
ctgttcaccagcgtggagcgctgggcgcagggcgggctgatcgatgtgctgctcaagcag
gtgcgcgacgagacttcgctggatgtgaagcgcgccgatttcaagctggacatgctgagc
ccgcacctgttcatgaacttccgcatcacggacgagcatggccgccagctgggccaggga
cgcaatctgggcgcgctcaaggccgagtggggcgtgaaggcgcgcggggcgttccaggcg
ctggcctccctgaaggtggctgccgtggtgcagggccagtcggagtccgcgcagaaggcg
ccgcacccggcccaggccggtgcgcccgctgcggccaaggcgggcggcgccgcctgcaag
cccgacaagagcgtgcccgcgcaggcccatgacacccgctacaaggaatggggtttcggc
gagctgcccgagctgatggaaatcaagaagggcggcaccacgctgatcggtttcccggcg
ctgatcgaccatggcgatgccgtcggcatcgaggtgttcgacgagcccgaggtggcggct
gccaagcaccgcgtgggcctgcgccgcctgtttgcgctgcagatccgcgatgcgctgaag
tacctggaaaagaacattcccgatctgcagaagatggccgtggcctatatgccgctgggc
acgcaggaggagctgcgcggccagatcatcgacgtggccattgaccgggcgttcctgcag
gacccgctgccggccaacgaggccgatttcaagcagcgcgtgcaggacggccgggggcgc
ctgaccctgatcgccaacgaggtggcgcgcatgagcgccaccatcctgaccgaatacgcg
gcggccgcacgcaagatcaaggacaccaagaacgcgcccgaggccaccaaggatgcgggc
gagcagctgcacaagctggtgcccaagaatttcatcgccgtggcgccgtggagccagctg
ggccactacgcgcgctatctgaaggccatcaccacgcggctggacaagtaccgcgccgac
ccggcccgcgatgccgctaagctcaaggagctgcagcccatggagcagcgctactggcgc
ctggtggccgagcgcaagggccaggtcgacgcccgcatgcaggaataccgctggatgctg
gaagagctgcgcgtgagctttttcgcgcaggagctgcgcacgccgtacccggtcagcacc
aagcggctggacaaggtctggcagcagctgcagcactga
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