Comamonas terrigena: CT3_27120
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Entry
CT3_27120 CDS
T09012
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ctez
Comamonas terrigena
Pathway
ctez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT3_27120 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctez03019
]
CT3_27120 (rhlE1)
Enzymes [BR:
ctez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CT3_27120 (rhlE1)
Messenger RNA biogenesis [BR:
ctez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CT3_27120 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BBL25257
LinkDB
All DBs
Position
3028264..3030156
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AA seq
630 aa
AA seq
DB search
MTFEELNLAPAIVKAVLEQGYENPTPIQAQAIPAVLTGQDLLAGAQTGTGKTAAFSLPML
HRLTQGGTQAPAGGIRALVLSPTRELAAQINENLVSYAKYLDVTSTVIFGGVGMKPQVDR
IRKGVDILVATPGRLLDLQQQGLVDLSQVEILVLDEADRMLDMGFIHDVKKVLNLVPKDK
QSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKEVLLHIIK
EHNWSQVLVFTRTKFGANNVADYLTKHGISAMALHGNKSQSARTQALAGFKTGELRALVA
TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMMEIE
RFTKQEIPVQVLEGFGPEADEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARQEMMDR
IRTNKVAQGGDRAAGKGKGPRPAAGGQGAAASEDGQRRQGHSNGSNRRGNDQARAPRPEF
AGEGDAQQRRSGQGFNRSRQRPSRDNPRADAPRSDFPRDEQRAPRSQPQRQIRDGYEGPS
RFDDQPPRANAHLGTHVGVIRNAAPRSNGGGGNGGQPDPMRTSVDSMADRGRRGGFGGGN
RRGGNGGGGGNGGGGFGGGNRRGGGGGFNR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaacctggcacctgccattgtcaaggccgtgctcgaacagggt
tacgagaacccgacacccatccaggcacaggcgatccccgctgtgctgaccggccaggat
ctgctggccggcgcccagaccggcaccggcaagacggctgccttctcgctgcccatgctg
caccgcctcacgcaaggcggcacccaggctccggccggcggcatccgcgctctggtgctc
tcgcccacccgcgagctggctgcccagatcaacgaaaacctcgtcagctacgccaagtac
ctggacgtgacctccaccgtcatcttcggcggcgtgggcatgaagccccaggtggaccgc
atccgcaagggcgtggacatcctggtggccacccccggccgtctgctggacctgcagcag
caaggtctggtggatctgtcccaggtcgaaatcctggtgctggacgaagccgaccgtatg
ctcgacatgggctttatccatgacgtgaaaaaggtcttgaacctggtgcccaaggacaag
caaagcctgctgttctccgccaccttcagcgacgacatccgcgagctggccaacagcctg
ctgaagaacccgcagtccatccaggtcacgccgcgcaacaccacggtgcagcgcatcacc
caggtgatccaccccgtgggccgcggcaagaagaaggaagtgctgctgcacatcatcaag
gaacacaactggagccaggtgctggtgttcacccgcaccaagttcggtgccaacaatgtg
gccgactacctgaccaagcacggcatcagcgccatggcgctgcacggcaacaagagccag
agcgcccgtacccaggcactggccggcttcaagaccggtgagctgcgcgccctggtggcc
accgacatcgcggcccgcggcatcgacatcgacgagctgccgcacgtcgtgaactacgaa
atccccaacgtccctgaagactacgtgcaccgtatcggccgtaccggccgcgccggccgc
gaaggccatgccgtcagcctggtgtgcatggacgaagaaggcttcatgatggagatcgag
cgcttcaccaagcaggagatcccggtgcaggtgctcgaaggcttcggccccgaagccgat
gagaaggccgaacccatcgccatgggccgccagaccatctggggcggtgccggcaagccg
cccagccgcgacgtgatgcaggccgctgcaaaggctgcgcgccaggaaatgatggaccgc
atccgcaccaacaaggtggcccagggtggcgaccgtgccgccggcaagggcaagggcccc
cgtcccgccgcaggtggccagggtgccgcggcatccgaagacggccagcgccgccagggt
cacagcaacggcagcaaccgccgtggcaacgaccaggcccgtgcaccgcgccccgaattc
gccggtgagggcgacgcccagcaacgccgcagcggccagggcttcaatcgctcgcgccaa
cgcccctcgcgtgacaacccgcgtgccgatgcaccgcgcagcgacttcccccgtgacgag
caacgcgcaccgcgcagccaaccccagcgccagatccgcgacggctacgaaggcccgagc
cgttttgacgaccaaccccctcgcgccaacgcccacctgggcacccatgtgggcgtgatc
cgcaatgccgctccgcgcagcaatggcggcggcggcaatggcggccagcctgacccgatg
cgcaccagcgtggacagcatggccgatcgcggtcgccgtggcggtttcggcggtggcaac
cgccgcggtggcaatggcggcggtggcggcaacggcggcggcggctttggcggcggcaac
cgccgtggtggtggcggcggcttcaaccgctga
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