Comamonas terrigena: CT3_31450
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Entry
CT3_31450 CDS
T09012
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ctez
Comamonas terrigena
Pathway
ctez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CT3_31450 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctez03021
]
CT3_31450 (rpoD)
Transcription machinery [BR:
ctez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CT3_31450 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
BBL25690
LinkDB
All DBs
Position
3493102..3495462
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AA seq
786 aa
AA seq
DB search
MKKPASSKAAEAKKDTKVATKSQAELKALADALLAADSKKRVSKKAAAVDGDEAEAPAKK
PAAAKKAAAKKTTTAKAAAADTDKAPAKRGRKPKAETAAKGGKPKDMSDDMDDADLDGDI
DGDIDGDVEVEAEAEVEVETTTTTEKAKPLRMKISKAKERALMKEFGLDETVLTEDELNT
RRQRLKALIKLGKTRGYLTNAEISDHLPDKLVDAETLEVVISMLNDMGVAVYEQTPDAET
LLLNNTGQSATTEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEGGLMDMMEAISASPATIAEILGMAEEIREGKVVISTVVDGFVNANENDDYVAEEDF
DEYDEEDDDDGKGGSKALTKKLEELKNEALSRFDSIRGHFEKMHKVYDKEGYGSATYMKI
QKTITEELMTIRFTAKTIEKLCDLVRAQVDDVRKKERELRKIIVDKCRMPQETFIKDFPP
NLLNLDWVTKQAAAGKPWSNVMARNIPPVQELQQNLIDLQSRVVVPLEELKRINKRMNDG
ERSSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKME
IPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGNNTAPIDAAMQAGLRDVVKDIL
DGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLR
SFIDSL
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaagcccgcctcgtccaaggcggccgaagccaagaaagacaccaaagtggcaacc
aaatcacaagctgaactcaaagccctggccgacgcgctgctcgcagcggattccaagaaa
cgcgtcagcaagaaagctgcagctgtagacggcgacgaagccgaagcccccgccaagaag
cctgccgccgccaagaaggccgcggccaagaagaccaccacggccaaggccgctgcagcc
gacaccgacaaggcgcccgccaagcgcggccgcaagcccaaggccgaaacggccgccaag
ggcggcaagcccaaggacatgtcggatgacatggacgatgccgatctggacggtgacatt
gacggcgacatcgatggcgatgtcgaagtggaggccgaagccgaagtggaagtggagacc
acgaccaccaccgagaaggccaagcccctgcgcatgaagatcagcaaggcgaaggaacgc
gccttgatgaaggaattcggcctggacgaaaccgtcctgaccgaagacgaactgaacacc
cgccgccagcgcctgaaggccctgatcaagctgggcaagacccgtggctacctgaccaac
gcggaaatctccgaccacttgcccgacaagctggtcgatgccgaaacgctggaagtcgtg
atctccatgttgaacgacatgggtgtggcggtctacgagcagacgcccgacgccgaaacc
ctgctgctgaacaacaccggacaatcggccaccaccgaagaagaagcggaagaagaagcc
gaagcggccctgtccaccgtggactcggaattcggccgcaccactgaccctgtgcgcatg
tacatgcgcgaaatggggacggtggaactgctgacgcgcgaaggcgaaatcgaaatcgcc
aagcgcatcgaaggcggtctgatggacatgatggaggccatctcggcttcccccgccacc
attgcggaaatcctgggcatggccgaggaaatccgtgaaggcaaggtcgtgatctccacc
gtggtcgacggtttcgtgaacgccaacgaaaacgacgactatgtggccgaagaagacttc
gacgagtacgacgaagaggacgacgacgacggcaagggcggctccaaggcactgaccaag
aagctcgaagagctgaagaacgaagccctgtcgcgcttcgacagcatccgcggccacttc
gagaagatgcacaaggtgtacgacaaggagggctacggctcggccacgtacatgaagatc
cagaagacgatcaccgaggagctgatgaccatccgcttcacggccaagacgatcgaaaag
ctctgcgatctggtgcgtgcccaggtggacgatgtgcgcaagaaggaacgcgagctgcgc
aagatcatcgtggacaagtgccgcatgccgcaggaaaccttcatcaaggacttcccgccc
aacctgctcaacctggactgggtcaccaagcaagccgccgccggcaagccttggagcaac
gtcatggcccgcaacatcccgcccgtgcaggagttgcagcagaacctgatcgacctgcag
tcccgcgtggtggtgccgctggaagagctcaagcgcatcaacaagcgcatgaacgacggt
gaacgctccagccgcgatgccaagaaggaaatgatcgaggccaacctgcgcctggtgatc
tccattgccaagaagtacaccaaccgtggcctgcagttcctggacctgatccaggaaggc
aacatcggcctgatgaaggcggtggacaagttcgaataccgccgcggctacaagttctcg
acctatgccacctggtggatccgccaggccatcacgcgttccatcgcggaccaggcccgc
acgatccgcatcccggtgcacatgatcgaaaccatcaacaagatgaaccgcatctcgcgc
cagcacttgcaggagtttggcttcgagcccgatgcgtccatcctggcggccaagatggag
atccccgaggacaagatccgcaagatcatgaagatcgccaaggagccgatctcgatggaa
acccccatcggcgacgacgacgattcgcacctgggcgacttcatcgaggacggcaacaac
accgcccccatcgatgccgccatgcaggccggcctgcgcgacgtggtcaaggacatcctc
gatggcctgaccccccgcgaagccaaggtgctgcgcatgcgcttcggcattgaaatgtcc
accgaccacacgctggaagaagtgggcaagcagttcgacgtgacgcgcgagcgcatccgc
cagatcgaagccaaggcactgcgcaagctgaagcaccccagccgcagcgacaagctgcgc
agcttcatcgattcgctgtaa
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