Comamonas terrigena: CT3_32370
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Entry
CT3_32370 CDS
T09012
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ctez
Comamonas terrigena
Pathway
ctez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT3_32370 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctez03019
]
CT3_32370 (rhlE_2)
Enzymes [BR:
ctez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CT3_32370 (rhlE_2)
Messenger RNA biogenesis [BR:
ctez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CT3_32370 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBL25782
LinkDB
All DBs
Position
complement(3593884..3595308)
Genome browser
AA seq
474 aa
AA seq
DB search
MGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENSSASPARHPV
RALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRL
LDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKNRTTLLFSATFSPEIKR
LAGSYLQDPVTIEVARPNETASTVEQRFYSANDDDKRRTICAVLKDRGIRQAFVFSNSKL
GCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDVPA
VFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVSNSDGKLVSDIEKLIKKKIDVENYPLP
SFQRRDRSERDHGSREGRSEHSRDHGRSRRGHDEGDTGYGSAHSAGYRPVGRGMARPLRA
GSSDPFFDKPYEAPAGTAAPAAWDAASAPVAPGCSPSIRTKRKVAALFKPAGSF
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgggctacgagtcgatgacccccatccaggcgcaggcgatccccgtggtcctgaccggc
aaggatgtgatgggtgcagcccagaccggcaccggcaagacagcggctttttcgctgccc
ctgctgcagcggctgatgcgccatgagaacagctcggcatcgcctgcgcgccatccggtg
cgggcgctggtgttgctgcccacgcgcgagctggccgaccaggtggcccagcagatcgcg
ctgtacgccaagcacaccaagctgcgcagcaccgtggtgttcggcggcatggacatgaag
ccccagaccctggagctgaagaagggcgtggaagtgctggtggccacccccggccgcctg
ctggaccacatcgaagccaagaatgccgtgctcaaccaggtggaatacgtggtgctggac
gaggccgaccgcatgctcgacatcggtttcctgcccgatctgcagcgcatcctgtcgcac
ctgcccaagaaccgcaccaccttgctgttctccgccacgttctcgcccgagatcaagcgc
ctggccggcagctacctgcaagacccggtgaccatcgaagtggcccgccccaacgagacc
gcttccaccgtggagcagcgtttctacagcgccaacgacgacgacaagcgccgcaccatc
tgtgccgtgctcaaggaccgcggcatccgccaggcctttgtgttttccaacagcaagctg
ggctgtgcccgcctgacccgtgcgctggaacgcgacggtctgcgcgccgccgccctgcac
ggtgacaagagccaggacgaacggctcaaggcgctggaagccttcaaggccggcgaagtg
gacctgctggtgtgcaccgacgtggcggcacgcggtctggacatcaaggatgtgccggcc
gtgttcaactacgacgtgccgttcaatgccgaagactatgtacaccgtatcggtcgcacc
ggccgtgccggcgcctccggcctggcggtgaccctggtgtccaattcggacggcaagctg
gtgagcgatatcgagaagctcatcaagaagaagatcgacgtggagaactatccactgccg
tcgttccagcgccgcgaccgcagcgagcgcgaccacggcagccgcgaaggccggtcggag
cacagccgtgaccatggtcgcagccgccgtggccacgacgagggcgataccggttacggc
tcggcccattccgccggctaccgcccggtgggccgtggcatggcacgcccgttgcgcgcc
ggctcttccgatcccttcttcgacaagccctacgaggccccggccggaacggccgcaccg
gcggcctgggatgcggcttccgcacccgtggcgccgggctgcagccccagtatccgtacc
aagcgcaaggtggcggcgctgttcaagcccgcaggcagtttctga
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