Comamonas terrigena: CT3_39450
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Entry
CT3_39450 CDS
T09012
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ctez
Comamonas terrigena
Pathway
ctez02020
Two-component system
ctez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CT3_39450 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CT3_39450 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctez03021
]
CT3_39450 (rpoN)
Transcription machinery [BR:
ctez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CT3_39450 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_5
Motif
Other DBs
NCBI-ProteinID:
BBL26490
LinkDB
All DBs
Position
complement(4407101..4408666)
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AA seq
521 aa
AA seq
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MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDDNPFLEVDSDDAPREDFG
LSQSDTPAQGDDYAADGALTAGAAEAPADSAEGPGSTEYDAPDWEGDGTSELRPDDSEWG
GDAPARNAQGGDGDEVSALDLARAHESLTDHLLRQSLSLHLSELDRYVLRFLIENLNDDG
YLEESLQSLAEGLAGTDDPEQLDELVHRFTVALRLLHSLEPVGVGAQGLAECLQLQLNHL
LQRGEAEASVVETALTICAQPLDLLARRDVRRLMQATGSSEERTRMAMALIARLEPRPGR
RFVNVERNIIVPDVIVTRAGRRASEGTPQFNVQLNPDVLPRLRVHDVYAGALRGHKGSEG
HAGLQQRLQEARWFIKNVQQRFDTILRVSRAIVERQKNFFVHGELAMRPLVLRDIADELG
LHESTISRVTTAKYMATPHGTFELKYFFGSGLGTETGGNASSTAVRALIKQFVSAENAKK
PLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKTL
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcctggtttgtcactgcgggtgtcgcagcatttggcgctgacgccgcaattgcag
cagtcgatccgcttgctgcagctgtccacgctggagctggcgcaggaagtcgagcagatg
ctcgacgacaacccgtttctggaagtcgacagcgacgacgccccccgcgaagacttcggc
ctgtcccagtcggacacgccggcgcagggcgatgactatgccgccgatggcgcgctgacg
gcaggggctgcggaggcgcccgccgacagtgcggaaggccccggcagcacggaatacgat
gcccccgactgggagggcgacggcaccagcgaactgcgccccgatgacagcgaatggggc
ggcgatgccccggcgcgcaacgcccagggcggcgatggcgacgaggtcagcgccctggat
ctggcccgtgcacatgaatcgctgaccgaccacctgctgcgccagtcgctgtcgctgcac
ctgtccgagctggaccgctatgtgctgcgtttcctgatcgagaacctgaatgacgacggc
tacctcgaagagtcgctgcagtccctggccgagggcctggccggcacggacgatccagag
cagctcgacgagctggtgcaccgcttcaccgtggcactgcggctgctgcacagcctggag
ccggtgggcgtgggcgcccaggggctggccgaatgcctgcagttgcagctgaaccatctg
ctgcagcgcggtgaggccgaggccagtgtggtggagacggcgctgaccatctgcgcccag
ccgctggacctgctggcccggcgcgatgtgcgccgcctgatgcaggccaccggcagcagc
gaagagcgcacccgcatggccatggcactgatcgcccggctggagccccggcccggccgg
cgctttgtcaatgtggagcgcaacatcatcgtgccggacgtgatcgtcacccgcgccggc
cgccgcgccagcgaaggcacaccccagttcaacgtgcagctcaaccccgacgtgctgccg
cgtctgcgcgtgcacgatgtgtatgccggtgcgctgcgcggccacaagggcagcgaaggc
catgccggcctgcagcagcgcctgcaggaagcccgctggttcatcaagaacgtgcagcag
cgtttcgacaccatcttgcgggtgtcgcgcgccatcgtggagcggcagaagaacttcttc
gtgcacggcgagctggccatgcgcccgctggtgctgcgcgacatcgccgacgaactgggc
ctgcacgaatccaccatcagccgggtgaccaccgccaagtacatggccacgccgcacggc
accttcgagctcaagtatttcttcggctccgggctgggcacggaaaccggcggcaatgcc
tccagcaccgcagtgcgggcgctgatcaagcagtttgtctcggccgagaacgccaagaag
ccgctgtcggacagccagatcgccgaaatgctcaaggagcagggcatcgagtgcgcccgc
cgcaccgtggccaagtaccgtgaggcgctgaagatcgcgccggccaatctgcgcaagacg
ctgtaa
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