Chlamydia trachomatis D-LC: CTDLC_0315
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Entry
CTDLC_0315 CDS
T01901
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ctf
Chlamydia trachomatis D-LC
Pathway
ctf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTDLC_0315 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctf03021
]
CTDLC_0315 (rpoB)
03400 DNA repair and recombination proteins [BR:
ctf03400
]
CTDLC_0315 (rpoB)
Enzymes [BR:
ctf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTDLC_0315 (rpoB)
Transcription machinery [BR:
ctf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTDLC_0315 (rpoB)
DNA repair and recombination proteins [BR:
ctf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTDLC_0315 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADI52002
LinkDB
All DBs
Position
complement(354701..358459)
Genome browser
AA seq
1252 aa
AA seq
DB search
MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKS
YNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIM
TDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFSFRIIPYRGSWLEAVFDINDL
IYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSLRLEKDFVALVGKVLADN
VVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDETLSQVT
LRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEKIVRE
RMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGP
GGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVR
DGIVTDEIEYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKGEAFEADTSTVTHMDV
SPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAI
IVAQEDGVVEYVDSYEIVVAKKNNPTLKDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHG
DVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSIYIEEFELTA
RDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEER
LLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKE
YKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIELLERESLVD
LLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKR
KLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLG
YAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYM
LKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagtgcccggagcgggtcagcatcaaaaagaaagaagatattttagatcttcct
aatcttgtcgaagttcaaatcaagtcgtataagcagtttcttcaaatcgggaagcttgct
gaagagcgagaaaacattggtttagaagaagtcttcagagaaattttccctatcaagtct
tataatgaagctacgattttagagtacctctcttataacttaggagtgcccaaatactcc
ccagaagagtgtattcgtcggggaatcacctatagtgttactttaaaggttcgtttccgt
ttaactgatgaaacggggattaaagaagaagaagtctatatgggaaccatccccatcatg
actgataagggaacctttattattaatggggcagagagagtcgttgtttctcaagtccac
cgttctccaggaatcaattttgaacaagaaaaacattctaaaggaaatgttttattttct
tttagaattattccttatcgaggaagttggttagaagctgtcttcgacattaatgacctt
atctatatccatattgataggaaaaaacgtcgcagaaagattttagctatgacgtttatc
cgagctttaggatattcaacagatgcagatattattgaagagttcttttctgtagaggag
cgttccttacgtttagagaaggattttgtcgcgttagttggtaaagttttagctgataac
gtagttgatgcggattcttcattagtttacgggaaagctggagagaagctaagtactgct
atgctaaaacgcatcttagatgcgggagtccaatctttgaagattgctgttggcgcagat
gaaaatcacccaattattaagatgctcgcaaaagatcctacggattcttacgaagctgct
cttaaagatttttatcgcagattacgaccaggagagcctgcaactttagttaatgctcga
tccacaattatgcgcttattcttcgatgctaaacgctataatttaggccgcgttggacgt
tataaattaaataaaaaattaggattcccattagacgacgaaacattatctcaagtgact
ttgagaaaagaagatgttatcggcgcgttgaaatatttgattcgtttgcgaatgggcgat
gagaagacatctatcgatgatattgaccatttggcaaaccgacgagttcgctctgttgga
gaactaattcagaatcactgtcgttctggattggctagaatggaaaagatcgttcgagaa
agaatgaatctctttgatttctcttctgataccctaactccaggaaagattatttctgct
aaagggttagtcagtgtcctgaaagatttcttcagccgttctcaattatctcagtttatg
gatcagacaaaccctgtcgcagaattgacgcacaagcgtcgtctgtcagcattaggacct
gggggattgaatagagaaagagctgggtttgaagttcgagacgttcacgcaagccactat
ggtagaatttgtccaattgagactcctgaaggaccaaacattgggttgattacttcactg
tcttcctttgctaagatcaatgaatttggattcatagagactccttatcgtgtcgtgcgc
gatggcatcgtgacagatgaaattgagtatatgacagcagatgttgaagaagagtgtgtc
attgctcaggcttctgcggagctcgatgagtatgatatgtttaaaactcccgtatgctgg
gctagatacaaaggagaggcttttgaagccgacacaagtacggttacgcatatggacgtt
tctccaaaacagctggtatctgtggttacggggctgattcctttcttggaacacgacgat
gctaaccgagctcttatgggatcgaacatgcaacggcaggctgtaccattattgaaaacg
gaagctgctattgttggaactggattagaagggcgtgctgccaaagattctggagctatt
attgtggctcaggaagatggggtagtcgaatacgtagatagctatgagattgtcgtagcg
aagaagaataatccaacgcttaaggatcgttatcagcttaaaaaattcttaagatccaac
tccggaacatgcatcaaccaaactcctttgtgttctgtgggagatgtggttacgcatgga
gatgttttagcggatggcccagcaaccgataaaggggaattggctcttggtaaaaacgta
ttagtagccttcatgccttggtacgggtataacttcgaagatgcgattatcatctccgag
aggttgattaaacaagatgcgtacacttctatttacatagaagaatttgagttaacagct
cgagatacaaaactcggtaaagaagaaattactagagatattcctaacgtttctgaagag
gttttggcaaatctcggagaggatggtgtcgtccgtattggggctgaagtcaagccggga
gatattcttgtcggtaaaatcactccgaaatctgagacggaactagctcctgaagagcgt
ttgttgcgagctatttttggagagaaggcggcggacgtaaaagatgcctctctaacggtt
cctcctggtacagaaggagtcgtaatggatgtcaaagtattcagcagaaaggatcgcttg
tccaagagcgatgatgaactggttgaagaagctgtgcatcttaaggatctacagaaagaa
tataagagtcagttagctcaattgaaagtagaacatagagagaaactgggggctctattg
ctcaatgaaaaagctcctgcagcgattatacaccgtcgttcggcagatattttggttcaa
gaaggtgctatttttgatcaagagactatcgaactcttagaaagagagtcgctagttgat
ttgctgatggctccttgtgacatgtatgatgttttgaaagatattctttctagctatgaa
acagctgttcagcgtttggaagtcaattataaaaccgaagctgagcacataaaagaaggt
gatgctgacttagatcatggagttatccgacaagttaaagtttacgtggcttccaagcga
aaacttcaagttggggataaaatggctggacgtcacggaaacaagggagtggtttccaag
attgttccagaagcagacatgcctttcttagctaacggtgaaacagtacagatgattttg
aacccgttaggggtgccttctcgaatgaaccttggacaggttttagagacacatttagga
tatgctgcaaaaactgcaggtatctatgtgaaaactccggtctttgaagggttcccagag
tctcgtatttgggatatgatgatagagcagggattgcccgaagatggtaagtcttaccta
tttgatggtaaaaccggagagcgtttcgatagcaaagtggtcgttggatacatctacatg
ttgaaattgagtcacttaattgctgataagatccacgctcgttctataggaccttactct
ctcgttacgcagcaacctcttggaggtaaagcgcagatgggaggacagagattcggggaa
atggaggtatgggctttagaggcgtatggggtagctcatatgttacaagagattctgact
gttaagtccgacgatgtttcgggaagaactcgtatctacgaatcaatcgtgaaaggagaa
aacttacttcgttctggaacgcctgagtcgttcaacgttttgattaaagaaatgcaaggt
ctagggcttgatgttcgccctatggtagtagatgcttaa
DBGET
integrated database retrieval system
